# Integrative analysis of the PSMA family identifies PSMA6 as an adverse prognostic biomarker promoting bladder cancer cell proliferation

**Authors:** Zhengnan Huang, Xiangqian Cao, Yilin Yan, Huaxing Li, Bing Shen, Tengjiao Wang

PMC · DOI: 10.7150/ijms.119034 · 2026-02-04

## TL;DR

This study finds that PSMA6 is a biomarker linked to worse outcomes in bladder cancer and may help predict immunotherapy response.

## Contribution

The study identifies PSMA6 as a novel adverse prognostic biomarker and potential immunotherapy predictor in bladder cancer.

## Key findings

- PSMA6 is upregulated in bladder cancer and linked to poor prognosis and tumor malignancy.
- PSMA6 is associated with immune-related activities and tumor-infiltrating immune cells in the tumor microenvironment.
- Knockdown of PSMA6 suppresses bladder cancer cell proliferation in vitro and in vivo.

## Abstract

Proteasome subunit alpha members (PSMAs) are reported to be involved in diverse biological processes, and mounting evidence indicates that PSMAs have been implicated in the carcinogenesis of various malignancies. Nevertheless, there is a scarcity of reports on the expression, prognostic significance, and potential functions of the PSMA family in bladder cancer (BLCA).

We utilized the TCGA, GEO, TIMER, UALCAN, and HPA databases to evaluate the expression of PSMAs in BLCA. Survival analyses were performed using Kaplan-Meier methods. The validation of PSMA6 dysregulation in human BLCA samples encompassed western blotting and immunohistochemistry. For the enrichment of biological processes, we applied Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analyses (GSEA). Subsequent analyses involved the exploration of correlations between gene expression and Immune-related effects. In-depth investigations into the role of PSMA6 in BLCA were conducted through both in vitro and in vivo experiments.

We demonstrated that PSMA6 was upregulated among PSMAs in BLCA, and overexpression of PSMA6 was associated with unfavorable prognosis and tumor malignancy. Enrichment analyses disclosed the involvement of PSMA6 in immune-related activities within the tumor microenvironment. Furthermore, the expression of PSMA6 was closely correlated with tumor-infiltrating immune cells (TICs) and immune checkpoints (ICPs). Besides, we also revealed that BLCA patients with high PSMA6 expression would have better immunotherapy response. Functional studies demonstrated that PSMA6 knockdown suppressed BLCA cell proliferation in vitro and in vivo.

Our findings suggested that PSMA6 might function as an unfavorable prognostic biomarker, fostering BLCA cell proliferation, while also potentially serving as a predictive indicator for the efficacy of immunotherapy in BLCA patients

## Linked entities

- **Genes:** PSMA6 (proteasome 20S subunit alpha 6) [NCBI Gene 5687]
- **Diseases:** bladder cancer (MONDO:0004986), BLCA (MONDO:0005611)

## Full-text entities

- **Genes:** Psma6 (proteasome subunit alpha 6) [NCBI Gene 26443] {aka IOTA}, PSMA6 (proteasome 20S subunit alpha 6) [NCBI Gene 5687] {aka IOTA, PROS27, p27K}, FOLH1 (folate hydrolase 1) [NCBI Gene 2346] {aka FGCP, FOLH, GCP2, GCPII, NAALAD1, PSM}, PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2) [NCBI Gene 5708] {aka P97, RPN1, S2, TRAP2}, STX16 (syntaxin 16) [NCBI Gene 8675] {aka SYN-16, SYN16}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, ANXA3 (annexin A3) [NCBI Gene 306] {aka ANX3}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, PSMA8 (proteasome 20S subunit alpha 8) [NCBI Gene 143471] {aka PSMA7L}, PSMC6 (proteasome 26S subunit, ATPase 6) [NCBI Gene 5706] {aka RPT5, SUG2, p42}, USP14 (ubiquitin specific peptidase 14) [NCBI Gene 9097] {aka TGT, Ubp6}, PSMA2 (proteasome 20S subunit alpha 2) [NCBI Gene 5683] {aka HC3, MU, PMSA2, PSC2}, PSMA3 (proteasome 20S subunit alpha 3) [NCBI Gene 5684] {aka HC8, PSC3}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, PSMA1 (proteasome 20S subunit alpha 1) [NCBI Gene 5682] {aka HC2, HEL-S-275, NU, PROS30}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, PSMC4 (proteasome 26S subunit, ATPase 4) [NCBI Gene 5704] {aka MIP224, RPT3, S6, TBP-7, TBP7}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, PSMA7 (proteasome 20S subunit alpha 7) [NCBI Gene 5688] {aka C6, HEL-S-276, HSPC, RC6-1, XAPC7}, HDHD5 (haloacid dehalogenase like hydrolase domain containing 5) [NCBI Gene 27440] {aka CECR5}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, LAP3 (leucine aminopeptidase 3) [NCBI Gene 51056] {aka HEL-S-106, LAP, LAPEP, PEPS}, SERPINB5 (serpin family B member 5) [NCBI Gene 5268] {aka PI5, maspin}
- **Diseases:** pan-carcinoma (MESH:C537931), non (MESH:C580335), gastric cancer (MESH:D013274), carcinogenesis (MESH:D063646), multiple myeloma (MESH:D009101), cancers (MESH:D009369), cervical cancer (MESH:D002583), pancreatic cancer (MESH:D010190), diabetic nephropathy (MESH:D003928), BLCA (MESH:D001749), TICs (MESH:D018270), breast cancer (MESH:D001943), lymph node metastasis (MESH:D008207), MIBC (MESH:D000093284), colon cancer (MESH:D015179)
- **Chemicals:** EdU (MESH:C022811), CCK-8 (MESH:D012844), TRIzol (MESH:C411644), streptomycin (MESH:D013307), paraffin (MESH:D010232), formaldehyde (MESH:D005557), ATP (MESH:D000255), CO2 (MESH:D002245), Hoechst33342 (MESH:C017807), 20S CP (-), crystal violet (MESH:D005840), puromycin (MESH:D011691), penicillin (MESH:D010406)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** 3020insC, -8C>G
- **Cell lines:** SCaBER — Homo sapiens (Human), Bladder squamous cell carcinoma, Cancer cell line (CVCL_3599), 5637 — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_0126), BLCA — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_S780), UM-UC-3 — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_1783), T24 — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_0554), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), RT4 — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_0036), J82 — Homo sapiens (Human), Bladder carcinoma, Cancer cell line (CVCL_0359), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12964584/full.md

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Source: https://tomesphere.com/paper/PMC12964584