# Sex-Specific Prediction Models of Alzheimer's Disease: A Gene Expression Analysis

**Authors:** Xiaomeng Ma, Abdilahi Abdi Ibrahim, Lili Ma, Xueying Ma, Zhan Ma, Yingying Liu, Donghong Li, Jia Liu, Xiaofeng Xu, Huimin Dong, Xiaohong Chen, Fuhua Peng

PMC · DOI: 10.7150/ijms.122666 · 2026-01-30

## TL;DR

This study identifies sex-specific gene expression patterns in Alzheimer's disease that could improve diagnosis and understanding of the condition.

## Contribution

The paper introduces sex-specific gene biomarkers and prediction models for Alzheimer's disease using blood and brain gene expression data.

## Key findings

- 74 and 89 differentially expressed genes were identified in female and male cohorts, respectively.
- Male-specific genes ERH and MRPS33 and female-specific genes NDUFA1 and NDUFS5 were found to be downregulated in AD.
- Both male- and female-specific prediction models achieved an AUC above 0.7 in external validation datasets.

## Abstract

Alzheimer's disease (AD) exhibits sex-specific molecular signatures that may improve diagnostic precision. We aimed to identify and validate male- and female-specific blood and brain gene expression biomarkers for AD prediction. We analyzed four GEO datasets (blood- and brain-derived) using limma and Fisher's meta-analysis to identify sex-specific differentially expressed genes, assessed age associations via linear regression, and constructed 10-fold cross-validated logistic regression models. After performing a meta-analysis, 74 differentially expressed genes were identified in the female cohort and 89 DEGs were screened in the male cohort. ERH and MRPS33 were identified as the most relevant genes in the male cohort, and NDUFA1 and NDUFS5 were screened in the female cohort. The identified genes were downregulated in AD samples compared to controls. Both male-specific and female-specific prediction models achieved an AUC of above 0.7 in two external validation blood-derived datasets as well entorhinal cortex dataset. Paradoxically, qPCR showed significant upregulation of all four genes in the AD group compared to the control group.

## Linked entities

- **Genes:** ERH (ERH mRNA splicing and mitosis factor) [NCBI Gene 2079], MRPS33 (mitochondrial ribosomal protein S33) [NCBI Gene 51650], NDUFA1 (NADH:ubiquinone oxidoreductase subunit A1) [NCBI Gene 4694], NDUFS5 (NADH:ubiquinone oxidoreductase subunit S5) [NCBI Gene 4725]
- **Diseases:** Alzheimer's disease (MONDO:0004975)

## Full-text entities

- **Genes:** MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, SERPINB1 (serpin family B member 1) [NCBI Gene 1992] {aka EI, ELANH2, HEL-S-27, HEL57, LEI, M/NEI}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, PSEN2 (presenilin 2) [NCBI Gene 5664] {aka AD3L, AD4, CMD1V, PS2, STM2}, MRPS33 (mitochondrial ribosomal protein S33) [NCBI Gene 51650] {aka CGI-139, MRP-S33, PTD003, S33mt, mS33}, SERPINB6 (serpin family B member 6) [NCBI Gene 5269] {aka CAP, DFNB91, MSTP057, PI-6, PI6, PTI}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, ERH (ERH mRNA splicing and mitosis factor) [NCBI Gene 2079] {aka DROER}, TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, SERPINB9 (serpin family B member 9) [NCBI Gene 5272] {aka CAP-3, CAP3, PI-9, PI9}, NDUFA1 (NADH:ubiquinone oxidoreductase subunit A1) [NCBI Gene 4694] {aka CI-MWFE, MC1DN12, MWFE, ZNF183}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, LRP10 (LDL receptor related protein 10) [NCBI Gene 26020] {aka LRP-10, LRP9, MST087, MSTP087}, PSEN1 (presenilin 1) [NCBI Gene 5663] {aka ACNINV3, AD3, CMD1U, FAD, PS-1, PS1}, NDUFS5 (NADH:ubiquinone oxidoreductase subunit S5) [NCBI Gene 4725] {aka CI-15k, CI15K}, CLU (clusterin) [NCBI Gene 1191] {aka AAG4, APO-J, APOJ, CLI, CLU1, CLU2}, BIN1 (bridging integrator 1) [NCBI Gene 274] {aka AMPH2, AMPHL, CNM2, SH3P9}
- **Diseases:** neurogenerative diseases (MESH:D001750), cancer (MESH:D009369), non-alcoholic fatty liver disease (MESH:D065626), neuronal energy failure (MESH:D051437), MCI (MESH:D060825), AD (MESH:D000544), neurodegenerative diseases (MESH:D019636), memory impairment (MESH:D008569), cognitive decline (MESH:D003072), amyloidosis (MESH:D000686), neuronal degeneration (MESH:D009410), Ribosomal dysfunction (MESH:D006331), dementia (MESH:D003704)
- **Chemicals:** isopropanol (MESH:D019840), ethanol (MESH:D000431), water (MESH:D014867), PBS (MESH:D007854), chloroform (MESH:D002725), ROX (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** GSE118553 — Konosirus punctatus (Dotted gizzard shad), Spontaneously immortalized cell line (CVCL_6F81)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12964574/full.md

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Source: https://tomesphere.com/paper/PMC12964574