# Rewiring Receptor Activation: Mechanistic Insights into Toggle Switch Modulation by 25CN-NBx Compounds

**Authors:** Vito F. Palmisano, Micaela Vidal−Sánchez, Juan J. Nogueira

PMC · DOI: 10.1021/acschemneuro.6c00023 · 2026-02-18

## TL;DR

This study uses simulations to show how 25CN-NBx compounds affect the 5-HT2A receptor, revealing how their structure influences receptor activation and signaling.

## Contribution

The study provides mechanistic insights into how bulky substitutions on 25CN-NBx compounds modulate the toggle switch residue W336 in the 5-HT2A receptor.

## Key findings

- Bulky substitutions on the N-benzyl ring shift the position of W336, a key toggle switch residue in the 5-HT2A receptor.
- 25CN-NB-2-OH-3-Me has the highest affinity for the 5-HT2A receptor, while 25CN-NB-2-OH-5-MeO has the lowest.
- The negative dihedral state of W336 strengthens van der Waals interactions with F332 and I163, stabilizing receptor activation.

## Abstract

The development of new treatments for neuropsychiatric
disorders
relies on a deeper understanding of the molecular mechanisms behind
psychedelic compounds, particularly how they differentiate between
hallucinogenic and antidepressant effects. In this study, we explore
by molecular dynamics simulations a series of 25CN-NBx compounds bound
to the 5-HT2A receptor. The simulations uncover that bulky
substitutions on the N-benzyl ring cause a significant
shift in the position of W336, a key toggle switch residue known to
influence receptor activation and thought to play a crucial role in
mediating psychedelic signaling. This result is confirmed through
potential of mean force calculations along the toggle switch’s
dihedral angle. End-state free energy calculations align closely with
experimental data, showing that 25CN-NB-2-OH-3-Me and 25CN-NB-2-OH-5-MeO
have the highest and lowest affinities, respectively, for the 5-HT2A receptor. Further analysis indicates that when W336 adopts
its negative dihedral state, it establishes stronger van der Waals
interactions, stabilizing its contacts with residues F332 and I163key
players previously linked to receptor activation. Our findings provide
a framework for understanding receptor activation and can be extended
to other G protein-coupled receptors where the toggle switch is central
to signal activation.

## Linked entities

- **Proteins:** Taf3 (TBP-associated factor 3)

## Full-text entities

- **Genes:** Gpbar1 (G protein-coupled bile acid receptor 1) [NCBI Gene 227289] {aka BG37, GPCR, GPR131, M-BAR, TGR5}, HTR2A (5-hydroxytryptamine receptor 2A) [NCBI Gene 3356] {aka 5-HT2A, HTR2}, Htr2a (5-hydroxytryptamine (serotonin) receptor 2A) [NCBI Gene 15558] {aka 5-HT-2, 5-HT-2A, E030013E04, Htr-2, Htr2}, Htr2c (5-hydroxytryptamine (serotonin) receptor 2C) [NCBI Gene 15560] {aka 5-HT-1C, 5-HT-2C, 5-HT1C, 5-HT2C, 5-HT2cR, 5-HTR2C}
- **Diseases:** hallucinatory (MESH:C000726587), neuropsychiatric disorders (MESH:D001523)
- **Chemicals:** LSD (MESH:D008238), ergotamines (MESH:D004879), 5-HT (MESH:D012701), hydrogen (MESH:D006859), tryptamines (MESH:D014363), -2-OH (-), amine (MESH:D000588), mescaline (MESH:D008635), dibenzofuran (MESH:C023614), water (MESH:D014867), 2,5-Dimethoxy-4-iodoamphetamine (MESH:C015952), phenethylamines (MESH:D010627)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12964406/full.md

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Source: https://tomesphere.com/paper/PMC12964406