# CEBPB-high dormant tumor cells drive immune evasion via S100A8 orchestrated tumor-associated macrophages reprogramming

**Authors:** Jin Bai, Huilan Su, Shunxi Wang, Yang Dong, Yong Gao

PMC · DOI: 10.7150/thno.124789 · 2026-02-26

## TL;DR

This study shows that dormant tumor cells in triple-negative breast cancer resist immunotherapy by reprogramming immune cells through the CEBPB-S100A8 pathway.

## Contribution

The study identifies CEBPB and S100A8 as key drivers of immune evasion in dormant tumor cells, offering a new therapeutic target for improving immunotherapy in TNBC.

## Key findings

- Dormant tumor cells resist immunotherapy and reside in an immunosuppressive niche with M2 macrophages and low CD8+ T cell infiltration.
- CEBPB maintains tumor dormancy by activating CCNG2 and orchestrating a tumor-supportive microenvironment through S100A8.
- Targeting CEBPB or S100A8 can overcome immunotherapy resistance and improve tumor microenvironment in TNBC.

## Abstract

Triple negative breast cancer (TNBC) poorly responds to immune checkpoint blockade (ICB) therapy. Dormant tumor cells are recognized as immunotherapy-resistant reservoirs that may lead to tumor relapse, although the underlying mechanisms remain to be fully elucidated.

Public scRNA-seq data was employed to identify dormant tumor cells in TNBC patients receiving ICB therapy. A TetOn-H2BeGFP system was used to label and track dormant tumor cells both in vivo and in vitro. CCK-8, colony formation, and PI staining assay were performed to identify CEBPB as a key factor in tumor dormancy maintenance. The role of CEBPB in immune evasion was evaluated by macrophage and CD8+ T cell proportions in tumors, via flow cytometry, immunohistochemistry, and multiplex immunofluorescence assays. RNA-seq and ChIP-seq were further employed to identify downstream targets of CEBPB, and ChIP-qPCR, qPCR, and Western blot were used to further validate these results.

We demonstrated that dormant tumor cells were resistant to ICB and resided within an immunosuppressive niche, characterized by increased M2 macrophages and reduced CD8+ T cell infiltration. CEBPB was identified as highly expressed in dormant tumor cells, where it maintained tumor dormancy by transcriptionally activating cell cycle negative regulators, particularly CCNG2. Notably, high CEBPB expression orchestrated a tumor-supportive microenvironment with macrophage recruitment, M2 macrophage polarization, and T cell suppression. Mechanistically, S100A8 was recognized as a key transcriptional target of CEBPB to promote M2 macrophage polarization. Targeting either CEBPB or S100A8 could overcome ICB resistance and remodel the tumor microenvironment.

Our study demonstrate a mechanistic link between tumor dormancy and immune evasion, highlighting the CEBPB-S100A8 axis as a promising therapeutic target to potentiate ICB efficacy in TNBC.

## Linked entities

- **Genes:** CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051], CCNG2 (cyclin G2) [NCBI Gene 901], S100A8 (S100 calcium binding protein A8) [NCBI Gene 6279]
- **Diseases:** triple negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** Tlr4 (toll-like receptor 4) [NCBI Gene 21898] {aka Lps, Ly87, Ran/M1, Rasl2-8}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, MRC1 (mannose receptor C-type 1) [NCBI Gene 4360] {aka CD206, CLEC13D, CLEC13DL, MMR, MRC1L1, bA541I19.1}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, CD14 (CD14 molecule) [NCBI Gene 929], Marcksl1 (MARCKS-like 1) [NCBI Gene 17357] {aka D4Bc1, F52, MacMARCKS, Macs2, Macs3, Mlp}, Cd68 (CD68 antigen) [NCBI Gene 12514] {aka Lamp4, Scard1, gp110}, CEBPB (CCAAT/enhancer binding protein beta) [NCBI Gene 396185] {aka NF-M}, ISYNA1 (inositol-3-phosphate synthase 1) [NCBI Gene 51477] {aka INO1, INOS, IPS, IPS 1, IPS-1}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, Cdk2 (cyclin dependent kinase 2) [NCBI Gene 12566] {aka A630093N05Rik}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, Mok (MOK protein kinase) [NCBI Gene 26448] {aka RAGE1, Rage, Stk30}, Ccr2 (C-C motif chemokine receptor 2) [NCBI Gene 12772] {aka Cc-ckr-2, Ccr2a, Ccr2b, Ckr2, Ckr2a, Ckr2b}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, PCSK7 (proprotein convertase subtilisin/kexin type 7) [NCBI Gene 9159] {aka LPC, PC7, PC8, SPC7}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Cebpb (CCAAT/enhancer binding protein beta) [NCBI Gene 12608] {aka C/EBPbeta, CRP2, IL-6DBP, LAP, LIP, NF-IL6}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, CCNG2 (cyclin G2) [NCBI Gene 901], Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, S100A8 (S100 calcium binding protein A8) [NCBI Gene 6279] {aka 60B8AG, CAGA, CFAG, CGLA, CP-10, L1Ag}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Cd44 (CD44 antigen) [NCBI Gene 12505] {aka HERMES, Ly-24, Pgp-1}, Ccng2 (cyclin G2) [NCBI Gene 12452], Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Cebpa (CCAAT/enhancer binding protein alpha) [NCBI Gene 12606] {aka C/ebpalpha, CBF-A, Cebp}, Cx3cr1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 13051] {aka mCX3CR1}, CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051] {aka C/EBP-beta, IL6DBP, NF-IL6, TCF5}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, Cd28 (CD28 antigen) [NCBI Gene 12487], Rb1 (RB transcriptional corepressor 1) [NCBI Gene 19645] {aka Rb, Rb-1, p110-RB1, pRb, pp105}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, Nmi (N-myc (and STAT) interactor) [NCBI Gene 64685], Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, S100a8 (S100 calcium binding protein A8 (calgranulin A)) [NCBI Gene 20201] {aka 60B8Ag, B8Ag, CFAg, CP-10, Caga, MRP8}, OVAL (ovalbumin (SERPINB14)) [NCBI Gene 396058] {aka OVA, SERPINB14}, Sned1 (sushi, nidogen and EGF-like domains 1) [NCBI Gene 208777] {aka 6720455I24Rik, D430044C15Rik, SST3, Snep}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, ARG1 (arginase 1) [NCBI Gene 383], ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, Cdkn1b (cyclin dependent kinase inhibitor 1B) [NCBI Gene 12576] {aka Kip1, p27, p27Kip1}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}
- **Diseases:** T (MESH:D001260), BMDMs (MESH:D001855), Tumors (MESH:D009369), pancreatic ductal adenocarcinoma (MESH:D021441), CKD (MESH:D020763), inflammatory (MESH:D007249), fibrosis (MESH:D005355), melanoma (MESH:D008545), metastasis (MESH:D009362), tumorigenic (MESH:D002471), colorectal cancer (MESH:D015179), liver cancer (MESH:D006528), Glioblastoma (MESH:D005909), TMA (MESH:D017695), hypoxia (MESH:D000860), mammary tumors (MESH:D015674), TAM (MESH:D020914), autoimmune diseases (MESH:D001327), breast cancer (MESH:D001943), TNBC (MESH:D064726)
- **Chemicals:** EDTA (MESH:D004492), Hoechst 33342 (MESH:C017807), IP (MESH:C041508), Streptomycin (MESH:D013307), acetone (MESH:D000096), Cy5 tyramide (-), OCT (MESH:C051883), hydrogen peroxide (MESH:D006861), DOX (MESH:D004318), paraffin (MESH:D010232), crystal violet (MESH:D005840), sodium citrate (MESH:D000077559), G418 (MESH:C010680), PI (MESH:D010716), puromycin (MESH:D011691), Penicillin (MESH:D010406), tetracycline (MESH:D013752), HEPES (MESH:D006531), PAQ (MESH:C573440), Biotin (MESH:D001710), TSA (MESH:C481298), nivolumab (MESH:D000077594), PBS (MESH:D007854), PVDF (MESH:C024865), Alexa Fluor  555 (MESH:C000608607), SDS (MESH:D012967), A (MESH:D001151), GlutaMax (MESH:C054122), Formalin (MESH:D005557), ethanol (MESH:D000431), DAPI (MESH:C007293), glycine (MESH:D005998), quinoline-3-carboxamide (MESH:C541322), CO2 (MESH:D002245), hygromycin B (MESH:D006921), polybrene (MESH:D006583), PFA (MESH:C003043), TRIzol (MESH:C411644)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031], Mycoplasma (genus) [taxon 2093]
- **Mutations:** T2A
- **Cell lines:** HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), 25389 — Homo sapiens (Human), Congenital disorder of deglycosylation, Transformed cell line (CVCL_BX31), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), 4T07 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_B383), D2A1 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_0I90), TetOn — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_A0TI), EMT6 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_1923), PT26 — Homo sapiens (Human), Malignant peripheral nerve sheath tumor, Cancer cell line (CVCL_AX35), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12964385/full.md

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Source: https://tomesphere.com/paper/PMC12964385