# Evaluation of direct-fed microbials as an alternative to ionophores and non-ionophore additives on in vitro ruminal fermentation, gas production kinetics, and digestibility in beef cattle’s forage-based diets

**Authors:** Edjane Pereira da Silva, Bruno Ieda Cappellozza, Joanis Tilemahos Zervoudakis, Filipe Araújo Canêdo Mendonça, Rafael Bonfim Fernandes, Luciano da Silva Cabral, Rosemary Lais Galati, Mozart Alves Fonseca, Nelcino Francisco de Paula

PMC · DOI: 10.1093/tas/txaf148 · Translational Animal Science · 2025-11-04

## TL;DR

This study explores whether Bacillus-based microbes can replace chemical additives in cattle feed to improve digestion and fermentation without negative side effects.

## Contribution

The study introduces Bacillus-based direct-fed microbials as a potential alternative to ionophores in cattle feed, showing comparable or better fermentation outcomes.

## Key findings

- DFM increased gas production in early incubation phases compared to control and some ionophores.
- Ionophores like Monensin and Narasin reduced digestion rates and nutrient digestibility.
- DFM did not impair ruminal fermentation and may be a viable alternative to antibiotics.

## Abstract

Two studies were conducted to evaluate the effects of a Bacillus-based direct-fed microbial (DFM) compared to ionophores and non-ionophore additives on in vitro ruminal fermentation parameters, gas production kinetics, as well as dry matter and fiber digestibility using two forage-based diets (medium- and low-quality tropical forages). For Exp. 1, Urochloa brizantha cv. Marandu (CP = 9.64%) was used as the medium-quality substrate (MF), alone or in combination with an energy-protein supplement (EPS), hereafter referred to as MF and MF-S, respectively. These substrates were incubated in triplicate, and six treatments were evaluated: Control (Con—no additive); two DFM levels: DFM1x (1.9 mg), and DFM5x (9.5 mg); Monensin (Mon; 20 ppm); Narasin (Nar; 13 ppm); and Flavomycin (Flavo; 4 ppm). In Exp. 2, U. brizantha cv. Marandu (CP = 3.0%) was used as the low-quality substrate (LF), alone or in combination with EPS, and defined as LF and LF-S, respectively. The additive treatments were the same as described in Exp. 1. In both experiments, an in vitro gas production (GP) system was used in four consecutive 96-h fermentation runs. The average values obtained from three bottles within each incubation were considered as the experimental unit. The data from each experiment were analyzed using a 2 × 6 factorial design. In Exp. 1, there were no significant interactions between substrates and feed additives (P > 0.05) for GP, kinetic parameters, and digestibility. DFM1x and DFM5x and Flavo increased (P < 0.05) GP in the initial hours of incubation, while Mon and Nar reduced it compared to Con (P < 0.01). The rate of digestion for the first pool (K1) was higher for Nar vs. DFM1x, DFM5x, Mon, and Flavo, but did not differ from Con (P < 0.01). Relative to other treatments, Mon reduced K1 (P < 0.01), and Mon and Nar reduced the rate of digestion for the second pool (K2) (P < 0.01). Overall, compared with other treatments, Mon and Nar reduced nutrient digestibility (P < 0.01) and acetate: propionate ratio (P < 0.01). In Exp. 2, substrate × additive interactions were observed for GP (P < 0.05). DFM1x increased (P < 0.01) GP compared with Con when substrate was LF, but did not differ (P > 0.05) from Con when LF-S was used. Mon and Nar reduced (P < 0.05) GP, rate digestion, and increased (P < 0.05) lag time compared to Con, DFM1x, DFM5x, and Flavo. Digestibility was not affected (P > 0.05) by DFM, but ionophores decreased it (P < 0.01) compared to Con. Total VFA did not differ (P = 0.11) among treatments, but Mon and Nar reduced (P = 0.02) acetate compared with Con and DFM1x and increased (P < 0.01) propionate compared with other treatments. These findings suggest, given increasing scrutiny of use of antibiotics and potential antimicrobial resistance uprise, DFM may be a viable alternative to ionophores without impairing ruminal fermentation.

Naturally occurring Bacillus bacteria may boost rumen fermentation in cattle fed forage diets, offering a promising natural alternative to conventional chemical feed additives supplementation.

## Linked entities

- **Chemicals:** Monensin (PubChem CID 441145), Narasin (PubChem CID 65452), Flavomycin (PubChem CID 11953887)
- **Species:** Urochloa brizantha (taxon 240448)

## Full-text entities

- **Genes:** LTF (lactotransferrin) [NCBI Gene 280846] {aka Lf}
- **Diseases:** DM (MESH:D015352), rumen acidosis (MESH:D000138), liver abscesses (MESH:D008100), Nitrogen deficiency (MESH:D007222), IVDMD (MESH:D004828), DFM (MESH:D015163), EPS (MESH:D011502)
- **Chemicals:** NaHCO3 (MESH:D017693), DDGS (-), aluminum (MESH:D000535), Mon (MESH:D008985), valeric acid (MESH:C038780), K+ (MESH:D011188), Na+ (MESH:D012964), aspartate (MESH:D001224), Butyrate (MESH:D002087), Propionate (MESH:D011422), starch (MESH:D013213), carbohydrates (MESH:D002241), Resazurin (MESH:C005843), CO2 (MESH:D002245), butyric acid (MESH:D020148), Iso-butyrate (MESH:D058610), KCl (MESH:D011189), Acetate (MESH:D000085), H. (MESH:D006859), glucose (MESH:D005947), ether (MESH:D004986), VFA (MESH:D005232), Flavo (MESH:D001455), succinate (MESH:D019802), NaCl (MESH:D012965), formate (MESH:C030544), ammonia (MESH:D000641), Nar (MESH:C013612), lactate (MESH:D019344), TA (MESH:D013635), isobutyric acid (MESH:C020380), methane (MESH:D008697), N (MESH:D009584), water (MESH:D014867), salinomycin (MESH:C010327), Val (MESH:D014633), propionic acid (MESH:C029658), acetic acid (MESH:D019342), ethanol (MESH:D000431), isovaleric acid (MESH:C008216), malate (MESH:C030298), NaOH (MESH:D012972), Valerate (MESH:D014631)
- **Species:** Butyrivibrio fibrisolvens (species) [taxon 831], S. ederensis [taxon 83383], Streptomyces prasinus (species) [taxon 67345], Bos taurus (bovine, species) [taxon 9913], Ruminococcus flavefaciens (species) [taxon 1265], Bacillus (genus) [taxon 55087], Bacillus subtilis (species) [taxon 1423], Streptomyces geysiriensis (species) [taxon 68207], Bacillus licheniformis (species) [taxon 1402], Hominimerdicola alba (species) [taxon 1264], Urochloa brizantha (bread grass, species) [taxon 240448]

## Full text

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## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12964122/full.md

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Source: https://tomesphere.com/paper/PMC12964122