# Overview of Chikungunya Virus Pathogenesis, Genome Variation, Epidemiology, and Control

**Authors:** Morvarid Hamrahjoo, Faezeh Shams, Nastaran Saadat, Shayan Marhamati, Ali Teimoori

PMC · DOI: 10.1016/j.virusres.2026.199703 · Virus Research · 2026-02-19

## TL;DR

This paper reviews how Chikungunya virus infects cells, spreads through mosquitoes, and suggests control strategies to prevent outbreaks.

## Contribution

The paper highlights MXRA8 as a key receptor for viral entry and discusses mutations that enhance transmission.

## Key findings

- MXRA8 is identified as a pivotal receptor for CHIKV entry into host cells.
- Key mutations like E1-A226V improve vector adaptation and global spread of CHIKV.
- CHIKV uses autophagy to boost replication and evades host immune defenses.

## Abstract

•MXRA8 identified as pivotal receptor in CHIKV entry.•Key mutations drive vector adaptation and global spread.•CHIKV exploits autophagy to enhance viral replication.•Neutralizing antibodies inform vaccine and therapy design.•Integrated control strategies crucial for outbreak prevention.

MXRA8 identified as pivotal receptor in CHIKV entry.

Key mutations drive vector adaptation and global spread.

CHIKV exploits autophagy to enhance viral replication.

Neutralizing antibodies inform vaccine and therapy design.

Integrated control strategies crucial for outbreak prevention.

Chikungunya virus (CHIKV) is an arthropod-borne alphavirus that causes an abrupt febrile illness typically marked by intense arthralgia, rash, and profound fatigue. Following transmission predominantly through Aedes mosquitoes, the virus is able to infect a broad range of host cell types, such as fibroblasts and macrophages, resulting in acute viremia with high viral titers and, in a subset of patients, prolonged arthritis-like manifestations. CHIKV carries a positive-sense, single-stranded RNA genome that encodes nonstructural proteins essential for viral replication as well as structural components required for virion assembly and host-cell entry. The MXRA8 receptor has recently been identified as a central determinant of viral entry and cellular tropism. Genomic analyses place CHIKV into three major lineages, and certain amino-acid substitutions, most notably the E1-A226V change, have been linked to improved adaptation to Aedes vectors and more efficient transmission. The host immune reaction is multifaceted, involving type I interferons, neutralizing antibodies, and virus-specific T-cell activity. Even so, the virus is able to bypass several of these defenses through established evasion mechanisms, which may contribute to prolonged infection in some cases. Given the continued expansion of Aedes mosquito populations driven by climate change, integrated vector-management strategies remain essential. These include chemical, biological, and genetic approaches aimed at curbing mosquito densities and reducing the impact of insecticide resistance. Sustained global surveillance and coordinated public-health interventions are critical to mitigating the growing burden of CHIKV and addressing the recent surge in large-scale outbreaks.

## Linked entities

- **Genes:** MXRA8 (matrix remodeling associated 8) [NCBI Gene 54587]
- **Species:** Aedes (taxon 7158)

## Full-text entities

- **Genes:** XBP1 (X-box binding protein 1) [NCBI Gene 7494] {aka TREB-5, TREB5, XBP-1, XBP2}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, FASLG (Fas ligand) [NCBI Gene 356] {aka ALPS1B, APT1LG1, APTL, CD178, CD95-L, CD95L}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, Isg20 (interferon-stimulated protein) [NCBI Gene 57444] {aka 1600023I01Rik, 2010107M23Rik, 20kDa, DnaQL, HEM45}, SH2D3A (SH2 domain containing 3A) [NCBI Gene 10045] {aka NSP1}, Tbk1 (TANK-binding kinase 1) [NCBI Gene 56480] {aka 1200008B05Rik}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, CP (ceruloplasmin) [NCBI Gene 1356] {aka AB073614, CP-2}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, Ifit1 (interferon-induced protein with tetratricopeptide repeats 1) [NCBI Gene 15957] {aka GARG-16, IFI-56K, ISG56, Ifi56, P56}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, BSG (basigin (Ok blood group)) [NCBI Gene 682] {aka 5F7, CD147, EMMPRIN, EMPRIN, HAb18G, OK}, MXRA8 (matrix remodeling associated 8) [NCBI Gene 54587] {aka ASP3}, Ifit3 (interferon-induced protein with tetratricopeptide repeats 3) [NCBI Gene 15959] {aka Ifi49, P49}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, ERN1 (endoplasmic reticulum to nucleus signaling 1) [NCBI Gene 2081] {aka IRE1, IRE1P, IRE1a, hIRE1p}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TLR8 (toll like receptor 8) [NCBI Gene 51311] {aka CD288, IMD98, TLR-8, hTLR8}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, Ifit2 (interferon-induced protein with tetratricopeptide repeats 2) [NCBI Gene 15958] {aka GARG-39, IFI-54K, Ifi54, P54}, CD14 (CD14 molecule) [NCBI Gene 929], CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, DHX58 (DExH-box helicase 58) [NCBI Gene 79132] {aka D11LGP2, D11lgp2e, LGP2, RLR-3}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, Isg15 (ISG15 ubiquitin-like modifier) [NCBI Gene 100038882] {aka G1p2, IGI15, IP17, Irfp, UCRP}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, TLR7 (toll like receptor 7) [NCBI Gene 51284] {aka IMD74, SLEB17, TLR7-like}, PHB1 (prohibitin 1) [NCBI Gene 5245] {aka BAP32, HEL-215, HEL-S-54e, PHB}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}
- **Diseases:** headache (MESH:D006261), Chronic inflammation (MESH:D007249), shock (MESH:D012769), febrile diseases (MESH:D004194), pain (MESH:D010146), multiorgan failure (MESH:D051437), edema (MESH:D004487), Rash (MESH:D005076), hemorrhage (MESH:D006470), Dengue (MESH:D003715), Viremia (MESH:D014766), fatigue (MESH:D005221), myositis (MESH:D009220), myocarditis (MESH:D009205), CPV-I (MESH:D006969), hypotension (MESH:D007022), febrile illness (MESH:D005334), cytopathic vacuoles (MESH:C536141), neurologic adverse effects (MESH:D000069451), systemic disease (MESH:D034721), cartilage damage (MESH:D002357), arthritis (MESH:D001168), rheumatoid arthritis (MESH:D001172), deaths (MESH:D003643), arboviral diseases (MESH:D004671), Infection (MESH:D007239), encephalitis (MESH:D004660), coagulation abnormalities (MESH:D001778), thrombocytopenia (MESH:D013921), toxicity (MESH:D064420), weight loss (MESH:D015431), Joint pain (MESH:D018771), petechiae (MESH:D011693), chronic musculoskeletal symptoms (MESH:D009140), CHIKV infections (MESH:D065632), hepatitis (MESH:D056486), muscle and joint pain (MESH:D063806), Zika (MESH:D000071243), Malaria (MESH:D008288), tissue damage (MESH:D017695), chronic (MESH:D002908), yellow fever viruses (MESH:D015004)
- **Chemicals:** permethrin (MESH:D026023), Pyrethroids (MESH:D011722), water (MESH:D014867), ddhCTP (MESH:C000629696), pyriproxyfen (MESH:C055613), spinosad (MESH:C415329), NO (MESH:D009569), delta methrin (MESH:C017180), superoxide (MESH:D013481), ISGs (-), Organophosphates (MESH:D010755), diflubenzuron (MESH:D004132), glycosaminoglycans (MESH:D006025), Abate (MESH:D000002), 3-Methyladenine (MESH:C025946), lipid (MESH:D008055), alpha cypermethrin (MESH:C017160), S-27 (MESH:C072789), ROS (MESH:D017382)
- **Species:** Aedes aegypti (yellow fever mosquito, species) [taxon 7159], Aedes albopictus (Asian tiger mosquito, species) [taxon 7160], Sindbis virus (no rank) [taxon 11034], Mus musculus (house mouse, species) [taxon 10090], Bacillus thuringiensis serovar israelensis (no rank) [taxon 1430], Venezuelan equine encephalitis virus (no rank) [taxon 11036], Macaca (macaque, genus) [taxon 9539], Aedes (subgenus) [taxon 149531], Cercopithecidae (monkey, family) [taxon 9527], Macaca mulatta (rhesus macaque, species) [taxon 9544], Homo sapiens (human, species) [taxon 9606], Bos taurus (bovine, species) [taxon 9913], Ross River virus (no rank) [taxon 11029], Beauveria bassiana (species) [taxon 176275], Semliki Forest virus (no rank) [taxon 11033], Metarhizium anisopliae (species) [taxon 5530], Chikungunya virus (no rank) [taxon 37124], Wolbachia (genus) [taxon 953]
- **Mutations:** L210Q, A226V, V264A, L210, V226A, Leucine to Glutamine, K211T, K291R, P318S, I317M
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12964048/full.md

## References

144 references — full list in the complete paper: https://tomesphere.com/paper/PMC12964048/full.md

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Source: https://tomesphere.com/paper/PMC12964048