# Comparative effects of dairy, hybrid and plant-based protein blends (including fibre fortification) on amino acid profiles and gut microbiota adaptations: The Promephy study

**Authors:** Justin Roberts, Joseph Lillis, Jeff Mercer, Helen Mercer, Ioannis Kostopoulos, Lotte Dopheide, Ashley G.B. Willmott, Sebastian Tims, Matthew Furber, Ardy Van Helvoort, Jorge Marques Pinto

PMC · DOI: 10.1016/j.crfs.2026.101359 · Current Research in Food Science · 2026-02-19

## TL;DR

This study compared how different protein sources, including plant-based ones with fiber, affect amino acid levels and gut bacteria in healthy people.

## Contribution

The study shows that plant-based proteins with fiber alter gut microbiota and amino acid profiles differently than dairy or hybrid blends.

## Key findings

- Plant-based protein blends reduced essential amino acid levels more than dairy or hybrid blends.
- Adding fiber to plant-based proteins increased saccharolytic metabolites and changed gut bacteria like Peptostreptoccaceae and Marinifilacaeae.
- Fiber-fortified plant-based protein may support gut health by altering microbial composition.

## Abstract

This study investigated the acute and sustained effects of different protein interventions on postprandial amino acid profiles, uremic toxins, faecal fermentation metabolites and microbiota composition in healthy volunteers. Sixteen participants (7 males, 9 females; mean [SD]: 37 [9] years; 69.4 [10.2] kg; 1.74 [0.08] m) completed four 2-week intervention periods, separated by a 6-week wash-out. For each intervention, participants were allocated 50 g d−1 protein from either a milk protein isolate (MPI), a hybrid blend (HYB), a plant-based blend (PB) or a PB blend with added mixed fibres (PBF) in addition to habitual dietary intake. Pre and post intervention, participants underwent laboratory assessment of amino acid profiling (4 h post consumption of 20 g protein from the allocated product), along with stool sample collection for microbiota sequencing.

Plasma essential amino acid (EAA) profiles and incremental area under the curve (iAUC) were lower for both PB products at baseline compared with MPI and HYB (MPI: 89,397 [18,025]; HYB: 87,301 [16,920]; PB: 65,350 [17,111]; PBF: 66,595[20,827] μmol·240 min L−1, p < 0.001). Following intervention, EAA profiles decreased further with both PB products, remaining lower than both MPI and HYB (MPI: 83,038 [20,983]; HYB: 76,341 [16,741]; PB: 56,075 [17,045]; PBF: 56,170 [15,213] μmol·240 min L−1, p < 0.001). After the 2-week intervention, L-leucine iAUC was lower for all products compared with MPI (MPI: 19,219 [4444]; HYB: 16,776 [3291]; PB: 12,003 [3008]; PBF: 11,948 [2991] μmol·240 min L−1, p ≤ 0.016), highlighting the importance of fortification or increased protein intake with PB containing products. PB inclusion into products resulted in minor increases in indoxyl sulfate within-intervention (p ≤ 0.039) which may be potentially beneficial in lower concentrations. Both HYB and PBF interventions resulted in increased saccharolytic metabolite production in relation to proteolytic metabolites (p ≤ 0.008). PBF resulted in a significant reduction in Peptostreptoccaceae compared to all products (p ≤ 0.007), as well as an increase in Marinifilacaeae (p = 0.014), which may support gastrointestinal health. The inclusion of fibre into protein interventions may therefore be beneficial for modulating metabolic ‘fates’ of protein, as well as supporting relative taxonomic changes which may regulate gastrointestinal integrity and function.

Image 1

•It is unclear if plant-protein and fibre impacts amino acid uptake or gut microbiota.•Essential amino acid uptake was lower with plant-protein than diary or hybrid blends.•Hybrid and fibre-fortified plant-protein enhanced saccharolytic activity by week 2.•Only plant-protein with fibre impacted Peptostreptoccaceae and Marinifilacaeae taxa.

It is unclear if plant-protein and fibre impacts amino acid uptake or gut microbiota.

Essential amino acid uptake was lower with plant-protein than diary or hybrid blends.

Hybrid and fibre-fortified plant-protein enhanced saccharolytic activity by week 2.

Only plant-protein with fibre impacted Peptostreptoccaceae and Marinifilacaeae taxa.

## Full-text entities

- **Genes:** AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, MPI (mannose phosphate isomerase) [NCBI Gene 4351] {aka CDG1B, PMI, PMI1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}
- **Diseases:** food allergies (MESH:D005512), flatulence (MESH:D005414), weight loss (MESH:D015431), diabetes mellitus (MESH:D003920), cancer (MESH:D009369), uremic (MESH:D006463), TAA (MESH:D017545), gastrointestinal symptoms (MESH:D012817), inflammation (MESH:D007249), vomiting (MESH:D014839), nausea (MESH:D009325), abdominal distension (MESH:D000007), dry mouth (MESH:D014987)
- **Chemicals:** alanine (MESH:D000409), Carbohydrate (MESH:D002241), arginine (MESH:D001120), TCA (MESH:D014238), Acetonitrile (MESH:C032159), serine (MESH:D012694), phenylalanine (MESH:D010649), tannins (MESH:D013634), p-cresyl sulfate (MESH:C408690), amino acid (MESH:D000596), N (MESH:D009584), butyrate (MESH:D002087), kynurenic acid (MESH:D007736), lactate (MESH:D019344), lactose (MESH:D007785), aspartic acid (MESH:D001224), pectin (MESH:D010368), IS (MESH:D007200), Ammonia (MESH:D000641), glucuronic acid (MESH:D020723), aromatic amino acids (MESH:D024322), o-phthaldialdehyde (MESH:D009764), formic acid (MESH:C030544), methanol (MESH:D000432), TAA (MESH:D013853), ornithine (MESH:D009952), PRO (MESH:D011392), hippuric acid (MESH:C030514), BCFA (-), methionine (MESH:D008715), sucralose (MESH:C026285), phytic acid (MESH:D010833), glycine (MESH:D005998), threonine (MESH:D013912), CHO (MESH:C034482), SCFA (MESH:D005232), asparagine (MESH:D001216), indole (MESH:C030374), kynurenine (MESH:D007737), alcohol (MESH:D000438), tryptophan (MESH:D014364), acetic (MESH:D019342), citrulline (MESH:D002956), perchloric acid (MESH:C576518), hydrochloric acid (MESH:D006851), glutamic acid (MESH:D018698), hydrogen (MESH:D006859), lysine (MESH:D008239), BCAA (MESH:D000597), L-norvaline (MESH:C005313), PBS (MESH:D007854), EAA (MESH:D000601), sodium borate (MESH:C010634), oat beta-glucan (MESH:C067858), 3-mercaptopropionic acid (MESH:D015097), polypropylene (MESH:D011126), cysteine (MESH:D003545), resistant starch (MESH:D000084922), sodium azide (MESH:D019810), butyric acid (MESH:D020148)
- **Species:** Homo sapiens (human, species) [taxon 9606], Powellomyces sp. EA (species) [taxon 252690], Oryza sativa (Asian cultivated rice, species) [taxon 4530]

## Full text

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## Figures

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## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963923/full.md

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Source: https://tomesphere.com/paper/PMC12963923