# Transcriptomics in Venous Leg Ulcers (VLU): A Systematic Review

**Authors:** Chien Lin Soh, Kia Hau Matthew Tan, Alun Huw Davies, Sarah Onida

PMC · DOI: 10.1111/wrr.70140 · Wound Repair and Regeneration · 2026-03-05

## TL;DR

This systematic review explores transcriptomic profiles in venous leg ulcers to better understand their chronic non-healing biology.

## Contribution

The study systematically reviews transcriptomic data from venous leg ulcers to identify biological pathways involved in wound chronicity.

## Key findings

- Transcriptomic profiles show altered mRNA expression linked to chronic inflammation and impaired healing in venous leg ulcers.
- Non-coding RNAs are implicated in regulating wound repair processes.
- Variability in gene expression suggests heterogeneity in VLU biology.

## Abstract

Venous leg ulcers (VLUs) are chronic wounds in the lower limbs that cause significant morbidity. The underlying biology underpinning non‐healing in VLUs is still poorly understood and differences in transcriptomic profiles may help elucidate biological pathways involved in wound chronicity. A systematic review was conducted in accordance with Preferred Reporting Items for Systematic Reviews and Meta‐Analyses. Studies were included if transcriptomes from adults with confirmed VLU were described. A search of EMBASE, OVID and PubMed between 1 January 1994 and 17 August 2024 yielded 429 articles; 34 studies were included after full‐text screening by two independent reviewers. Twenty‐nine studies investigated coding messenger RNA (mRNA) expression, while five studies investigated non‐coding RNA. Samples were obtained from wound biopsies (n = 31) or whole blood (n = 3). There were variations in mRNA expression across comparisons between patients with VLUs and controls such as tissue from other patients, tissue from different sites and treated tissues. Altered levels of mRNA transcripts suggest chronic inflammatory states, hyperproliferation and reduced wound healing. Studies exploring non‐coding RNAs described their roles in regulating wound repair. Paired analyses of microRNA expression demonstrate impact on RNA expression profiles, with effects on inhibition of wound healing. Transcriptomic analysis provides new insights into the pathophysiology of the development and healing of VLUs. Further development of RNA biomarkers and gene expression profiles can improve diagnosis and prognostication of VLUs, but heterogeneity of current data may make it difficult to draw clinical significance.

Trial Registration: PROSPERO: CRD42024580526

## Full-text entities

- **Genes:** e2f1.L (E2F transcription factor 1 L homeolog) [NCBI Gene 100036852] {aka e2f1, xE2F}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, PLAU (plasminogen activator, urokinase) [NCBI Gene 5328] {aka ATF, BDPLT5, QPD, UPA, URK, u-PA}, BMP2 (bone morphogenetic protein 2) [NCBI Gene 650] {aka BDA2, BMP2A, SSFSC, SSFSC1}, SERPINB2 (serpin family B member 2) [NCBI Gene 5055] {aka HsT1201, PAI, PAI-2, PAI2, PLANH2}, AMFR (autocrine motility factor receptor) [NCBI Gene 267] {aka GP78, RNF45, SPG89}, vegfa.L (vascular endothelial growth factor A L homeolog) [NCBI Gene 373589] {aka VEGF, vegf-a, vegfa, vegfa-a, vegfa-b}, PHACTR3 (phosphatase and actin regulator 3) [NCBI Gene 116154] {aka C20orf101, H17739, PPP1R123, SCAPIN1, SCAPININ}, CCNA2 (cyclin A2) [NCBI Gene 890] {aka CCN1, CCNA}, SPRR3 (small proline rich protein 3) [NCBI Gene 6707], EGR3 (early growth response 3) [NCBI Gene 1960] {aka EGR-3, PILOT}, MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, ANGPT2 (angiopoietin 2) [NCBI Gene 285] {aka AGPT2, ANG2, LMPHM10}, MT1H (metallothionein 1H) [NCBI Gene 4496] {aka MT-0, MT-1H, MT-IH, MT1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, SLC36A1 (solute carrier family 36 member 1) [NCBI Gene 206358] {aka Dct1, LYAAT1, PAT1, TRAMD3}, CCN2 (cellular communication network factor 2) [NCBI Gene 1490] {aka CTGF, HCS24, IBP-8, IGFBP8, KMD, NOV2}, F13A1 (coagulation factor XIII A chain) [NCBI Gene 2162] {aka F13A}, BMP7 (bone morphogenetic protein 7) [NCBI Gene 655] {aka OP-1}, ID4 (inhibitor of DNA binding 4) [NCBI Gene 3400] {aka IDB4, bHLHb27}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, ANGPT1 (angiopoietin 1) [NCBI Gene 284] {aka AGP1, AGPT, AGPT-1, ANG1, HAE5}, CLDN5 (claudin 5) [NCBI Gene 7122] {aka AWAL, BEC1, CPETRL1, TMDVCF, TMVCF}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, KRT6A (keratin 6A) [NCBI Gene 3853] {aka CK-6C, CK-6E, CK6A, CK6C, CK6D, K6A}, RBL2 (RB transcriptional corepressor like 2) [NCBI Gene 5934] {aka BRUWAG, P130, Rb2}, TYRO3 (TYRO3 protein tyrosine kinase) [NCBI Gene 7301] {aka BYK, Dtk, Etk-2, RSE, Rek, Sky}, PLA2G2A (phospholipase A2 group IIA) [NCBI Gene 5320] {aka MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1}, TYRP1 (tyrosinase related protein 1) [NCBI Gene 7306] {aka CAS2, CATB, GP75, OCA3, TRP, TRP1}, igf1.L (insulin like growth factor 1 L homeolog) [NCBI Gene 378699] {aka IGF-I, igf-1, igf1, igf1-A, igf1.S, xigf1}, KLK2 (kallikrein related peptidase 2) [NCBI Gene 3817] {aka KLK2A2, hGK-1, hK2}, EXTL1 (exostosin like glycosyltransferase 1) [NCBI Gene 2134] {aka EXTL}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PLG (plasminogen) [NCBI Gene 5340] {aka HAE4}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, DIO2 (iodothyronine deiodinase 2) [NCBI Gene 1734] {aka 5DII, D2, DIOII, SELENOY, SelY, TXDI2}, GP9 (glycoprotein IX platelet) [NCBI Gene 2815] {aka CD42a, GPIX}, MED12L (mediator complex subunit 12L) [NCBI Gene 116931] {aka NIZIDS, NOPAR, TNRC11L, TRALP, TRALPUSH}, MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314] {aka CHDS6, MMP-3, SL-1, STMY, STMY1, STR1}, FLT1 (fms related receptor tyrosine kinase 1) [NCBI Gene 2321] {aka FLT, FLT-1, VEGFR-1, VEGFR1}, MT2A (metallothionein 2A) [NCBI Gene 4502] {aka MT-2, MT-II, MT2}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, MT1X (metallothionein 1X) [NCBI Gene 4501] {aka MT-1l, MT1}, TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, KRT2 (keratin 2) [NCBI Gene 3849] {aka CK-2e, K2e, KRT2A, KRT2E, KRTE}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, KRT10 (keratin 10) [NCBI Gene 3858] {aka BCIE, BIE, CK10, EHK, EHK2, EHK2A}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, PRR3 (proline rich 3) [NCBI Gene 80742] {aka CAT56}, CLDN3 (claudin 3) [NCBI Gene 1365] {aka C7orf1, CPE-R2, CPETR2, HRVP1, RVP1}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, CCNF (cyclin F) [NCBI Gene 899] {aka FBX1, FBXO1, FTDALS5}, KRT16 (keratin 16) [NCBI Gene 3868] {aka CK16, FNEPPK, K16, K1CP, KRT16A, NEPPK}, GAS6 (growth arrest specific 6) [NCBI Gene 2621] {aka AXLLG, AXSF}, FLG (filaggrin) [NCBI Gene 2312] {aka ATOD2, FLG-1, FLG1}, TNC (tenascin C) [NCBI Gene 3371] {aka 150-225, DFNA56, GMEM, GP, HXB, JI}
- **Diseases:** VLU (MESH:D014647), stasis dermatitis (MESH:D003872), hypoxic (MESH:D002534), BLCC (MESH:D000381), Psoriatic (MESH:D015535), pain (MESH:D010146), Inflammatory (MESH:D007249), Wounds (MESH:D014947), venous disease (MESH:D004194), venous reflux (MESH:D005764), vasculitis (MESH:D014657), diabetes (MESH:D003920), venous insufficiency (MESH:D014689), sickle cell (MESH:D000755), chronic pain (MESH:D059350), peripheral arterial disease (MESH:D058729), CVD (MESH:D002908), tissue damage (MESH:D017695), dysregulated immunity (OMIM:614878), decubitus ulcers (MESH:D003668), blisters (MESH:D001768), diabetic foot wounds (MESH:D017719), ulcer (MESH:D014456), vascular dysfunction (MESH:D002561), infection (MESH:D007239)
- **Chemicals:** oxygen (MESH:D010100), reactive oxygen species (MESH:D017382), Autologous (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12963810/full.md

## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963810/full.md

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Source: https://tomesphere.com/paper/PMC12963810