# FOXA2 as a SETD1A-Regulated Driver of Tamoxifen Resistance in Breast Cancer

**Authors:** Myeong Ryeo Kim, Jae Rim Lee, Xiaohan Zhang, Kwang Won Jeong

PMC · DOI: 10.32604/or.2025.072592 · Oncology Research · 2026-02-24

## TL;DR

This study shows that FOXA2, regulated by SETD1A, drives tamoxifen resistance in breast cancer, suggesting a new treatment strategy.

## Contribution

The study identifies FOXA2 as a novel driver of tamoxifen resistance regulated by SETD1A in breast cancer.

## Key findings

- FOXA2 expression is elevated in tamoxifen-resistant and ERα-negative breast cancer cells.
- SETD1A directly regulates FOXA2 expression through histone methylation.
- FOXA2 knockdown restores tamoxifen sensitivity and inhibits cancer cell traits.

## Abstract

Tamoxifen is a key drug that provides endocrine therapy for estrogen receptor (ER) α-positive breast cancer; however, resistance remains a significant clinical challenge. This study aims to investigate the molecular mechanisms of tamoxifen resistance in ERα-positive breast cancer, with particular focus on the role of SET Domain Containing 1A (SETD1A)-driven forkhead box A2 (FOXA2) as a key regulator of this resistance.

FOXA2 expression and its regulation by SETD1A were assessed via (quantitative polymerase chain reaction), western blotting, transcriptome profiling, and chromatin immunoprecipitation analyses. The effects of FOXA2 on cell proliferation, migration, invasion, and cancer stem cell traits were evaluated using small interfering RNA (siRNA)-mediated silencing. Clinical relevance was examined by analyzing patient datasets and tumor tissue microarrays.

FOXA2 expression was significantly elevated in tamoxifen-resistant (TamR) and ERα-negative breast cancer cells compared to that in ERα-positive MCF-7 cells, regardless of tamoxifen treatment or ERα depletion. Transcriptome and chromatin immunoprecipitation analyses revealed that SETD1A, a histone methyltransferase, directly regulated FOXA2 expression. Functionally, FOXA2 knockdown inhibited the proliferation, migration, invasion, and cancer stem cell properties of TamR cells while restoring tamoxifen sensitivity. High FOXA2 expression was correlated with poor survival and reduced responsiveness to tamoxifen in patients with ER-positive breast cancer.

Our findings identified FOXA2 as a key mediator of tamoxifen resistance regulated by SETD1A and suggested that targeting the SETD1A-FOXA2 axis may offer a novel strategy for overcoming endocrine resistance in breast cancer.

## Linked entities

- **Genes:** FOXA2 (forkhead box A2) [NCBI Gene 3170], SETD1A (SET domain containing 1A, histone lysine methyltransferase) [NCBI Gene 9739], ESR1 (estrogen receptor 1) [NCBI Gene 2099]
- **Chemicals:** tamoxifen (PubChem CID 2733526)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, CYP19A1 (cytochrome P450 family 19 subfamily A member 1) [NCBI Gene 1588] {aka ARO, ARO1, CPV1, CYAR, CYP19, CYPXIX}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, FOXA1 (forkhead box A1) [NCBI Gene 3169] {aka HNF3A, TCF3A}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, EPAS1 (endothelial PAS domain protein 1) [NCBI Gene 2034] {aka ECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73}, FOXA3 (forkhead box A3) [NCBI Gene 3171] {aka FKHH3, HNF3G, TCF3G}, FOXA2 (forkhead box A2) [NCBI Gene 3170] {aka HNF-3-beta, HNF3B, TCF3B}, SETD1A (SET domain containing 1A, histone lysine methyltransferase) [NCBI Gene 9739] {aka EPEDD, EPEO2, KMT2F, NEDSID, Set1, Set1A}
- **Diseases:** tumorigenesis (MESH:D063646), AML (MESH:D015470), cervical cancer (MESH:D002583), pancreatic cancer (MESH:D010190), NEPC (MESH:D011471), lung cancer (MESH:D008175), lung invasive (MESH:D008171), cancer (MESH:D009369), adenocarcinoma (MESH:D000230), ovarian cancer (MESH:D010051), lymph node metastases (MESH:D008207), TNBC (MESH:D064726), BC (MESH:D001943), RCC (MESH:D002292), HCC (MESH:D006528), CRC (MESH:D015179), metastasis (MESH:D009362), mucinous adenocarcinoma (MESH:D002288), endocrine (MESH:D004700)
- **Chemicals:** TRIzol (MESH:C411644), phenol (MESH:D019800), ethanol (MESH:D000431), glycine (MESH:D005998), biotin (MESH:D001710), SDS (MESH:D012967), TE (MESH:D013691), Triton X-100 (MESH:D017830), Tamoxifen (MESH:D013629), EDTA (MESH:D004492), polybrene (MESH:D006583), chloroform (MESH:D002725), paraformaldehyde (MESH:C003043), CO2 (MESH:D002245), 4-hydroxytamoxifen (MESH:C016601), SYBR Green (MESH:C098022), formaldehyde (MESH:D005557), 4',6-diamidino-2-phenylindole (MESH:C007293), sodium acetate (MESH:D019346), Tween 20 (MESH:D011136), PBS (MESH:D007854), PVDF (MESH:C024865), Oligofectamine (MESH:C484027), puromycin (MESH:D011691), 5-ethynyl uridine (-), crystal violet (MESH:D005840)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), TamR — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_VQ68), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12963674/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963674/full.md

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Source: https://tomesphere.com/paper/PMC12963674