# IFI44 Promotes Clear Cell Renal Cell Carcinoma Progression via PRDX1 and Predicts Poor Prognosis

**Authors:** Yipeng Xu, Renjun Gu, Hao Zhang, Qiyin Zhou, Yongbo Wang, He Wang, Wei Zhu, Desheng Zhu, Mei Song, Junjie Bai, Jun Lin, Song Zheng, Jianhui Chen, Shaoxing Zhu

PMC · DOI: 10.34133/research.1102 · Research · 2026-03-06

## TL;DR

IFI44 promotes kidney cancer progression by interacting with PRDX1 and is linked to poor patient outcomes.

## Contribution

Identifies IFI44 as a novel oncogene in ccRCC and links it to PRDX1 and an immunosuppressive tumor environment.

## Key findings

- IFI44 is elevated in ccRCC tissues and correlates with advanced tumor stage and poor survival.
- IFI44 knockdown reduces cancer cell proliferation, migration, and invasion.
- IFI44 interacts with PRDX1 and influences immune cell infiltration in the tumor microenvironment.

## Abstract

Clear cell renal cell carcinoma (ccRCC) is a lethal urologic malignancy with limited biomarkers for prognosis and therapeutic stratification. Interferon-induced protein 44 (IFI44) has been implicated in immune regulation, but its role in ccRCC is unclear. To address this gap, we comprehensively investigated the clinical significance, biological roles, and molecular mechanisms of IFI44 in ccRCC pathogenesis. Using integrative transcriptomic analysis of the Gene Expression Omnibus and the Cancer Genome Atlas-Kidney Clear Cell Carcinoma cohorts, we first identified IFI44 as a key candidate gene. Bioinformatic enrichment analyses and immune infiltration profiling were conducted to investigate potential mechanisms. In parallel, we established ccRCC cell lines with stable IFI44 knockdown and evaluated phenotypic changes using Cell Counting Kit-8, Transwell assays, wound-healing assays, and flow cytometry, thereby examining cell proliferation, apoptosis, migration, and invasion. We observed that IFI44 was markedly elevated in ccRCC tissues, and its increased level was closely associated with advanced tumor stage and poorer patient survival. Enrichment analyses indicated that IFI44 participates in pathways related to viral response, RNA splicing, and mRNA processing. Moreover, elevated IFI44 expression may be associated with an immunosuppressive tumor microenvironment, as suggested by increased infiltration of effector T cells and M1 macrophages, along with decreased infiltration of activated dendritic cells. In mechanistic studies, IFI44 knockdown markedly suppressed cell proliferation, triggered apoptosis, and reduced both migratory and invasive capacities, whereas PRDX1 overexpression rescued these phenotypes and PRDX1 was shown to interact with IFI44. In summary, the data show that IFI44 acts as an oncogene in ccRCC, promoting tumor progression through its interaction with PRDX1 while also shaping an immunosuppressive microenvironment, and suggest that IFI44 is a promising biomarker of prognosis and candidate therapeutic target for ccRCC.

## Linked entities

- **Genes:** IFI44 (interferon induced protein 44) [NCBI Gene 10561], PRDX1 (peroxiredoxin 1) [NCBI Gene 5052]
- **Diseases:** clear cell renal cell carcinoma (MONDO:0005005), ccRCC (MONDO:0007763)

## Full-text entities

- **Genes:** CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, IFI44L (interferon induced protein 44 like) [NCBI Gene 10964] {aka C1orf29, GS3686, TLDC5B}, ACSL4 (acyl-CoA synthetase long chain family member 4) [NCBI Gene 2182] {aka ACS4, FACL4, LACS4, MRX63, MRX68, XLID63}, IFI44 (interferon induced protein 44) [NCBI Gene 10561] {aka MTAP44, TLDC5, p44}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 3303] {aka HEL-S-103, HSP70, HSP70-1, HSP70-1A, HSP70-2, HSP70.1}, TPM3 (tropomyosin 3) [NCBI Gene 7170] {aka CAPM1, CFTD, CMYO4A, CMYO4B, CMYP4A, CMYP4B}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, SETD2 (SET domain containing 2, histone lysine methyltransferase) [NCBI Gene 29072] {aka HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A}, BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}, PBRM1 (polybromo 1) [NCBI Gene 55193] {aka BAF180, PB1, RCC, SMARCH1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, FKBP5 (FKBP prolyl isomerase 5) [NCBI Gene 2289] {aka AIG6, FKBP51, FKBP54, P54, PPIase, Ptg-10}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, IFNA8 (interferon alpha 8) [NCBI Gene 3445] {aka IFN-alphaB}, PRDX1 (peroxiredoxin 1) [NCBI Gene 5052] {aka MSP23, NKEF-A, NKEFA, PAG, PAGA, PAGB}, IFI27 (interferon alpha inducible protein 27) [NCBI Gene 3429] {aka FAM14D, ISG12, ISG12A, P27}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, Ifi44 (interferon-induced protein 44) [NCBI Gene 99899] {aka A430056A10Rik, MTAP44, p44}
- **Diseases:** lung cancer (MESH:D008175), Cancer (MESH:D009369), toxicity (MESH:D064420), herpes simplex virus (MESH:D006561), NOD (MESH:D020191), inflammation (MESH:D007249), Metastases (MESH:D009362), urologic malignancy (MESH:D014571), melanoma (MESH:D008545), rheumatoid arthritis (MESH:D001172), tumorigenic (MESH:D002471), influenza A (MESH:D007251), viral infection (MESH:D014777), adult kidney tumors (MESH:D007680), systemic lupus erythematosus (MESH:D008180), non-small cell lung cancer (MESH:D002289), Clear Cell Renal Cell Carcinoma (MESH:D002292), Kaposi sarcoma-associated herpesvirus infections (MESH:D012514), head and neck squamous cell carcinoma (MESH:D000077195), hypoxia (MESH:D000860), breast and lung cancers (MESH:D001943), renal inflammatory diseases (MESH:D007674), autoimmune disorders (MESH:D001327), tumorigenesis (MESH:D063646)
- **Chemicals:** Lipofectamine 2000 (MESH:C086724), MTT (MESH:C070243), pembrolizumab (MESH:C582435), gefitinib (MESH:D000077156), CCK-8 (-), propidium iodide (MESH:D011419), hydrogen peroxide (MESH:D006861), crystal violet (MESH:D005840), puromycin (MESH:D011691), NH3 (MESH:D000641), PVDF (MESH:C024865), SDS (MESH:D012967), H2O (MESH:D014867), bicinchoninic acid (MESH:C047117), CO2 (MESH:D002245), paraformaldehyde (MESH:C003043)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], hepatitis C virus [taxon 11103], Pan troglodytes (chimpanzee, species) [taxon 9598]
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), TCHu135 — Homo sapiens (Human), Lesch-Nyhan syndrome, Finite cell line (CVCL_R904), TCHu186 — Homo sapiens (Human), Amyotrophic lateral sclerosis 1, Induced pluripotent stem cell (CVCL_C1UR), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), Caki-1 — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_0234), /c — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_9103), Caki-2 — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_0235), 786-O — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1051), ACHN — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_1067), TCHu199 — Homo sapiens (Human), Trichothiodystrophy 3, photosensitive, Transformed cell line (CVCL_2555)

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963643/full.md

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Source: https://tomesphere.com/paper/PMC12963643