# Engineering of induced pluripotent stem cells for the efficient development of non-alloreactive, hypoimmunogenic CD8αβ CAR-T cells

**Authors:** Alexandros Nianias, Afroditi Katsarou, Henk Jan Prins, Aida Shahrabi, Cindy van Velzen, Linda Henneman, Ruud Ruiter, Tuna Mutis, Richard Groen, Maria Themeli

PMC · DOI: 10.3389/fimmu.2026.1757174 · Frontiers in Immunology · 2026-02-20

## TL;DR

Scientists engineered stem cells to create CAR-T cells that avoid immune rejection and work against tumors.

## Contribution

A novel method for generating hypoimmunogenic, non-alloreactive CD8αβ CAR-T cells using genome-edited iPSCs.

## Key findings

- Genome-edited iPSCs produced TCR-negative CD8αβ CAR-T cells with anti-tumor activity and no alloreactivity.
- HLA-E expression protected CAR-T cells from immune rejection, but B2M disruption caused genomic instability.
- Multiplex engineering at specific loci improves iPSC-based CAR-T cell development efficiency.

## Abstract

Induced pluripotent stem cells (iPSCs) are a promising platform to produce “off-the-shelf” chimeric antigen receptor (CAR)-engineered T cells (CAR-T) with thepotential for multiplex genetic engineering.

Here, we employed genome editing to knock out the TRAC and B2M genes in iPSC lines, while simultaneously harnessing the edited loci to introduce a drug-inducible CAR and the human leukocyte antigen (HLA)-E single chain trimer.

The inducible CAR expression allowed the robust generation of T-cell receptor (TCR)-negative CD8ab+ CAR-T cells with demonstrable anti-tumor efficacy and lack of alloreactivity. HLA-class Inegative, HLA-Epositive CD8 CAR-T cells were protected against immune rejection; however, disruption of B2M resulted in genomic instability and affected the efficiency of T-cell development and the functionality of the generated T cells.

Facilitating multiplex engineering at well-characterized genomic loci and regulation of possible developmental effects will empower the use of engineered iPSC as a viable method to efficiently produce “off-the-shelf” CART cells.

## Linked entities

- **Genes:** TRAC (T cell receptor alpha constant) [NCBI Gene 28755], B2M (beta-2-microglobulin) [NCBI Gene 567]
- **Proteins:** HLA-E (major histocompatibility complex, class I, E), CASR (calcium sensing receptor), Tcr (Third chromosome alpha methyl dopa-resistant)

## Full-text entities

- **Genes:** CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, Cd19 (CD19 antigen) [NCBI Gene 12478], CD7 (CD7 molecule) [NCBI Gene 924] {aka GP40, LEU-9, TP41, Tp40}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD38 [NCBI Gene 101101308], Cd27 (CD27 antigen) [NCBI Gene 21940] {aka S152, Tnfrsf7, Tp55}, Il2rg (interleukin 2 receptor, gamma chain) [NCBI Gene 16186] {aka CD132, [g]c, gamma(c), gc, p64}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Cd28 (CD28 antigen) [NCBI Gene 12487], Il7 (interleukin 7) [NCBI Gene 16196] {aka A630026I06Rik, Il-7, hlb368}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, Pdcd1 [NCBI Gene 100135770], B2M [NCBI Gene 494145], Ccr7 (C-C motif chemokine receptor 7) [NCBI Gene 12775] {aka CC-CKR-7, CCR-7, CD197, Cdw197, Cmkbr7, EBI1}, RNF112 (ring finger protein 112) [NCBI Gene 7732] {aka BFP, ZNF179}, Cd5 (CD5 antigen) [NCBI Gene 12507] {aka Ly-1, Ly-12, Ly-A, Lyt-1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CD5 (CD5 molecule) [NCBI Gene 921] {aka LEU1, T1}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Klrc1 (killer cell lectin-like receptor subfamily C, member 1) [NCBI Gene 16641] {aka CD159a, NKG2A, NKG2B}, Nr1i3 (nuclear receptor subfamily 1, group I, member 3) [NCBI Gene 12355] {aka CAR, CAR-beta, Care2, ESTM32, MB67}, CD27 (CD27 molecule) [NCBI Gene 939] {aka S152, S152. LPFS2, T14, TNFRSF7, Tp55}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, HLA-G (major histocompatibility complex, class I, G) [NCBI Gene 3135] {aka MHC-G}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, TRAC (T cell receptor alpha constant) [NCBI Gene 28755] {aka IMD7, TCRA, TRCA}, Tcra (T cell receptor alpha chain) [NCBI Gene 21473] {aka Tcralpha}, B2M (beta-2-microglobulin) [NCBI Gene 567] {aka AMYLD6, IMD43, MHC1D4}, Rag2 (recombination activating gene 2) [NCBI Gene 19374] {aka Rag-2}, PVR (PVR cell adhesion molecule) [NCBI Gene 5817] {aka CD155, HVED, NECL5, Necl-5, PVS, TAGE4}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, CD276 (CD276 molecule) [NCBI Gene 80381] {aka 4Ig-B7-H3, B7-H3, B7H3, B7RP-2}, Cd38 (CD38 antigen) [NCBI Gene 12494] {aka ADPRC 1, Cd38-rs1, I-19}, Trac (T cell receptor alpha constant) [NCBI Gene 100101484] {aka Gm16914, Tcra, Tcra-C}, TREH (trehalase) [NCBI Gene 11181] {aka TRE, TREA, TREHD}, Il15 (interleukin 15) [NCBI Gene 16168] {aka IL-15}, Dtc1 (detected by T cells 1) [NCBI Gene 104218] {aka Dtc-1, tra-1}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, Sell (selectin, lymphocyte) [NCBI Gene 20343] {aka CD62L, L-selectin, LAM-1, LECAM-1, LECAM1, Lnhr}, HLA-E (major histocompatibility complex, class I, E) [NCBI Gene 3133] {aka HLA-6.2, QA1}, Fgf2 (fibroblast growth factor 2) [NCBI Gene 14173] {aka Fgf-2, Fgf2a, Fgfb, bFGF}, CD34 (CD34 molecule) [NCBI Gene 947], Cd7 (CD7 antigen) [NCBI Gene 12516], NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, CIITA (class II major histocompatibility complex transactivator) [NCBI Gene 4261] {aka C2TA, CIITAIV, MHC2D1, MHC2TA, NLRA}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, Cd8b1 (CD8 subunit beta 1) [NCBI Gene 12526] {aka Cd8b, Ly-3, Ly-C, Lyt-3}, DLL4 (delta like canonical Notch ligand 4) [NCBI Gene 54567] {aka AOS6, delta4, hdelta2}, KLRC1 (killer cell lectin like receptor C1) [NCBI Gene 3821] {aka CD159A, NKG2, NKG2A}, CD8B (CD8 subunit beta) [NCBI Gene 926] {aka CD8B1, CD8beta, LEU2, LY3, LYT3, Ly-3}, Ncam1 (neural cell adhesion molecule 1) [NCBI Gene 17967] {aka CD56, E-NCAM, NCAM-1, Ncam}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}
- **Diseases:** Cytotoxicity (MESH:D064420), trisomy 12 (MESH:C538299), aneuploidy (MESH:D000782), GvHD (MESH:D006086), Cancer (MESH:D009369), MM (MESH:D009101), hematological malignancies (MESH:D019337)
- **Chemicals:** 2-mercaptoethanol (MESH:D008623), amino acids (MESH:D000596), Busulfan (MESH:D002066), penicillin (MESH:D010406), puromycin (MESH:D011691), tetracycline (MESH:D013752), mitomycin C (MESH:D016685), Y-27632 (MESH:C108830), 250ml (-), sodium bicarbonate (MESH:D017693), DMSO (MESH:D004121), DAPI (MESH:C007293), glucose (MESH:D005947), PVDF (MESH:C024865), PBS (MESH:D007854), Tween (MESH:D011136), nucleosides (MESH:D009705), chloroform (MESH:D002725), polybrene (MESH:D006583), L-glutamine (MESH:D005973), CO2 (MESH:D002245), SB431542 (MESH:C459179), streptomycin (MESH:D013307), D-luciferin (MESH:C532924), nitrogen (MESH:D009584), NP40 (MESH:C010615), FITC (MESH:D016650), NaCl (MESH:D012965), sodium deoxycholate (MESH:D003840), T (MESH:D014316), dox (MESH:D004318), GlutaMAX (MESH:C054122), SDS (MESH:D012967), L-ascorbic acid (MESH:D001205), calcium phosphate (MESH:C020243), TRIzol (MESH:C411644), isoflurane (MESH:D007530), water (MESH:D014867), phenol (MESH:D019800)
- **Species:** Homo sapiens (human, species) [taxon 9606], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093]
- **Mutations:** S19004C, F565S
- **Cell lines:** GFP9 — Mus musculus (Mouse), Hybridoma (CVCL_A8DW), CD5-RPE — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_4388), OP9 — Mus musculus (Mouse), Stromal cell line (CVCL_4398), 3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), OP9-DL1 — Mus musculus (Mouse), Stromal cell line (CVCL_B218), UM9 — Mus musculus (Mouse), Hybridoma (CVCL_WN42), MEF — Mus musculus (Mouse), Finite cell line (CVCL_9115), CRL-1658 — Homo sapiens (Human), Nevoid basal cell carcinoma syndrome, Finite cell line (CVCL_2Z69), K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), DL4 — Homo sapiens (Human), Burkitt lymphoma, Cancer cell line (CVCL_IU45)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12963348/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963348/full.md

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Source: https://tomesphere.com/paper/PMC12963348