# Gut microbiota and sarcoidosis: a concise review

**Authors:** Roberto G. Carbone, Francesco Puppo, Victor F. Tapson

PMC · DOI: 10.3389/fmed.2026.1747012 · Frontiers in Medicine · 2026-02-20

## TL;DR

This review explores the possible role of gut and lung microbiota in sarcoidosis, a disease characterized by granulomas, and compares it to other lung diseases.

## Contribution

The paper provides a concise review of microbial involvement in sarcoidosis pathogenesis and compares the lung microbiome in sarcoidosis with other interstitial lung diseases.

## Key findings

- The lung microbiome in sarcoidosis differs from healthy individuals, with conflicting results on bacterial and fungal abundance.
- Cutibacterium acnes and Mycobacterium tuberculosis are strongly associated with sarcoidosis in a meta-analysis of over 6,000 patients.
- Microbial presence in sarcoid granulomas is often detected genomically, with limited bacteriological or proteomic confirmation.

## Abstract

Microbial involvement in sarcoidosis pathogenesis is suggested by the observation that histological findings in sarcoid granulomas are like those of leprosy, tuberculosis and parasitic infection. Some studies have shown that the lung microbiome in patients with sarcoidosis is different from healthy individuals. Results are conflicting, reporting an abundance or decrease in bacterial and fungal species. The altered composition of the microbiome in sarcoidosis can contribute to the formation of granulomas, typical lesions of the disease, through interactions with the host immune system. However, no single microbe has been clearly demonstrated as a cause of sarcoidosis, several microorganisms have been involved in the formation of granulomas and are under study. In fact, various microorganisms have been detected in sarcoid granulomas and in the tissue of different organs. Microorganisms were demonstrated at the genomic level and only a few studies showed microbial presence using bacteriological or proteomic methods. A possible microbial involvement in sarcoidosis pathogenesis is further supported by studies reporting innate immune system activation and increased inflammatory cytokines secretion. Of note, a meta-analysis involving over 6,000 patients identified a strong association between Cutibacterium acnes and Mycobacterium tuberculosis and sarcoidosis. Interestingly, some studies have compared microbiomes in sarcoidosis with chronic respiratory conditions like chronic obstructive pulmonary disease, asthma, interstitial lung disease, and occupational lung diseases. Little is known whether gut microbiota alteration plays a causal role in the development of these diseases or is a consequence of a shared risk factor profile. However, current evidence does not conclusively support the causative role of microbes in sarcoidosis. Furthermore, research is studying the role of intestinal microbiomes in sarcoidosis with some studies showing that the restoration of the intestinal microbiome could be a possible therapeutic approach. The aims of the review are: (1) to clarify microbial involvement in sarcoidosis pathogenesis, (2) to describe microbiota in lungs of patients with sarcoidosis and to compare the data with other interstitial lung diseases.

## Linked entities

- **Diseases:** sarcoidosis (MONDO:0008399), leprosy (MONDO:0005124), tuberculosis (MONDO:0018076), chronic obstructive pulmonary disease (MONDO:0005002), asthma (MONDO:0004979), interstitial lung disease (MONDO:0015925)
- **Species:** Cutibacterium acnes (taxon 1747), Mycobacterium tuberculosis (taxon 1773)

## Full-text entities

- **Genes:** IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, SLC11A1 (solute carrier family 11 member 1) [NCBI Gene 6556] {aka LSH, NRAMP, NRAMP1}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, XAF1 (XIAP associated factor 1) [NCBI Gene 54739] {aka BIRC4BP, HSXIAPAF1, XIAPAF1}, MRPL43 (mitochondrial ribosomal protein L43) [NCBI Gene 84545] {aka L43mt, MRP-L43, bMRP36a, mL43}, HLA-DRB1 (major histocompatibility complex, class II, DR beta 1) [NCBI Gene 3123] {aka DRB1, HLA-DR1B, HLA-DRB, SS1}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, BTNL2 (butyrophilin like 2) [NCBI Gene 56244] {aka BTL-II, BTN7, HSBLMHC1, SS2}, HLA-B (major histocompatibility complex, class I, B) [NCBI Gene 3106] {aka AS, B-4901, HLAB}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, ZNF688 (zinc finger protein 688) [NCBI Gene 146542], ANXA11 (annexin A11) [NCBI Gene 311] {aka ALS23, ANX11, CAP-50, CAP50, IBMWMA}
- **Diseases:** leprosy (MESH:D007918), COVID-19 infection (MESH:D000086382), Lung sarcoidosis (MESH:D012507), IPF (MESH:D054990), infections (MESH:D007239), chronic cough (MESH:D003371), bacterial infections (MESH:D001424), lymphoma (MESH:D008223), granuloma (MESH:D006099), tuberculosis (MESH:D014376), parasitic infection (MESH:D010272), ILD (MESH:D017563), immune dysregulation (OMIM:614878), fungal and bacterial infections (MESH:D009181), Infectious and Parasitic Diseases (MESH:D003141), granulomatous inflammation (MESH:D007249), skin lesions (MESH:D012871), lung diseases (MESH:D008171), Dysbiosis (MESH:D064806), cancer (MESH:D009369), lung cancer (MESH:D008175), asthma (MESH:D001249), cystic fibrosis (MESH:D003550), pneumonia (MESH:D011014), COPD (MESH:D029424)
- **Chemicals:** H&amp;E (MESH:D006371), ethambutol (MESH:D004977), heme (MESH:D006418), amino acid (MESH:D000596), rifampin (MESH:D012293), prednisone (MESH:D011241), minocycline (MESH:D008911), short-chain fatty acids (MESH:D005232), azithromycin (MESH:D017963), doxycycline (MESH:D004318), levofloxacin (MESH:D064704), iron (MESH:D007501)
- **Species:** Streptococcus (genus) [taxon 1301], Viruses (acellular root) [taxon 10239], Mycobacterium tuberculosis (species) [taxon 1773], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Bacteroides (genus) [taxon 816], Fusobacterium (genus) [taxon 848], Cutibacterium (genus) [taxon 1912216], Candida [taxon 1535326], Homo sapiens (human, species) [taxon 9606], gut metagenome (species) [taxon 749906], Cutibacterium acnes (species) [taxon 1747], Prevotella (genus) [taxon 838], Haemophilus (genus) [taxon 724], Neisseria (genus) [taxon 482], Veillonella (genus) [taxon 29465], Enterobacter (genus) [taxon 547], Fungi (kingdom) [taxon 4751], Aspergillus nidulans (species) [taxon 162425]

## Full text

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## Figures

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## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963304/full.md

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Source: https://tomesphere.com/paper/PMC12963304