# mRNA-based SARS-CoV-2 vaccines: intracellular processing and aggregation of the encoded spike protein as a mechanistic contributor to cardiac cellular stress

**Authors:** Rolf Schreckenberg, Nadine Woitasky, Nadja Itani, Laureen Czech, Anita C. Windhorst, Malte Juchem, Christian Bär, Thomas Thum, Péter Ferdinandy, Rainer Schulz

PMC · DOI: 10.3389/fimmu.2026.1635478 · Frontiers in Immunology · 2026-02-20

## TL;DR

This study explores how mRNA vaccines for SARS-CoV-2 may cause cardiac stress by examining how the spike protein is processed in heart cells.

## Contribution

The study reveals intracellular aggregation patterns of spike proteins and their impact on cardiac cells, offering new insights into vaccine-related cardiac stress.

## Key findings

- Both Comirnaty and Spikevax vaccines produce variable S2 subunits in different cell types.
- High-molecular-weight spike complexes form rapidly and consistently in all tested cell lines.
- Spike protein derivatives induce inflammation and oxidative stress in cardiomyocytes.

## Abstract

The trimeric spike (S) protein on the envelope of the SARS-CoV-2 virus is the primary target structure for currently approved corona vaccines. For this reason, the two mRNA-based corona vaccines Comirnaty (BNT162b2, Pfizer/BioNTech) and Spikevax (mRNA-1273, Moderna) first induce the production of a spike monomer in body cells. After enzymatic cleavage by the endoprotease furin, two S subunits are formed, which are supposed to trigger the desired immune response following secretion. Based on this concept, a preventive measure against symptomatic SARS-CoV-2 infections became available within one year of the pandemic’s onset. mRNA-based vaccines have proven highly effective in reducing severe disease and mortality. However, both the virus itself and mRNA vaccines have been associated with cardiac symptoms, which are commonly classified as myocarditis, pericarditis, or a combination thereof based on clinical presentation. Although vaccine-induced myocarditis remains a rare adverse event, recent longitudinal studies have raised questions regarding its long-term impact.

To better understand the molecular mechanisms potentially involved in vaccine-associated cardiac side effects, we investigated the translation and proteolytic processing of the encoded spike monomers in human AC16 cardiomyocytes, as well as (for comparative purposes) in HEK-293 and HeLa cells.

In all three cell types, both BNT162b2 and mRNA-1273 produced two divergently sized monomer translation products from which one S1 subunit was formed after enzymatic cleavage. However, the number of identified S2 subunits varied between two and four depending on the cell line and mRNA used. Within a few hours, covalently bonded high-molecular complexes formed from both the spike monomers and their subunits. The arrangement of these complexes always adhered to a consistent pattern in each cell type. Particularly in AC16 cardiomyocytes, the various spike protein derivatives impaired not only cell proliferation, but also induced a pro-inflammatory response and oxidative stress. Only the secreted S1 subunit was detected as an immunogen in the supernatant of all three cell lines.

Our findings may help to improve the safety and specificity of future mRNA platform technologies by emphasizing the importance of evaluating intracellular protein processing and the potential cellular effects of translated immunogens already during preclinical development.

## Linked entities

- **Proteins:** CHMP5 (charged multivesicular body protein 5), FURIN (furin, paired basic amino acid cleaving enzyme)
- **Diseases:** myocarditis (MONDO:0004496), pericarditis (MONDO:0005904)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** S (surface glycoprotein) [NCBI Gene 43740568] {aka spike glycoprotein}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, ROBO3 (roundabout guidance receptor 3) [NCBI Gene 64221] {aka HGPPS, HGPPS1, HGPS, RBIG1, RIG1}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, FURIN (furin, paired basic amino acid cleaving enzyme) [NCBI Gene 5045] {aka FUR, PACE, PCSK3, SPC1}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, HPRT1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 3251] {aka HGPRT, HPRT}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, PPA1 (inorganic pyrophosphatase 1) [NCBI Gene 5464] {aka HEL-S-66p, IOPPP, PP, PP1, SID6-8061}, RYR2 (ryanodine receptor 2) [NCBI Gene 6262] {aka ARVC2, ARVD2, RYR-2, RyR, VACRDS, VTSIP}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IFIT1 (interferon induced protein with tetratricopeptide repeats 1) [NCBI Gene 3434] {aka C56, G10P1, IFI-56, IFI-56K, IFI56, IFIT-1}
- **Diseases:** myocarditis (MESH:D009205), sudden cardiac death (MESH:D016757), myocardial injury (MESH:D009202), arrhythmias (MESH:D001145), varicella-zoster lesion (MESH:D020804), pulmonary embolism (MESH:D011655), cardiotoxic (MESH:D066126), neurological symptoms (MESH:D009461), mitochondrial (MESH:D028361), ECG abnormalities (MESH:D053840), cardiac inflammation (MESH:D007249), neuroinflammation (MESH:D000090862), endothelial dysfunction (MESH:D014652), cardiac involvement (MESH:D006331), heart failure (MESH:D006333), long Covid (MESH:D000094024), infectious diseases (MESH:D003141), ventricular tachyarrhythmias (MESH:D014693), viral infection (MESH:D014777), death (MESH:D003643), thrombosis (MESH:D013927), pericarditis (MESH:D010493), arrhythmic and irregular contractions (MESH:D008599), cardiovascular side effects (MESH:D064420), COVID-19 (MESH:D000086382), myocardial infarction (MESH:D009203), infection (MESH:D007239), cardiovascular complications (MESH:D002318)
- **Chemicals:** phospholipid (MESH:D010743), H2O (MESH:D014867), ethanol (MESH:D000431), cholesterol (MESH:D002784), SDS (MESH:D012967), magnesium acetate (MESH:C000656591), DTT (MESH:D004229), dihydroethidium (MESH:C067883), SM-102 (MESH:C000712867), 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (MESH:C000626005), 1,2-distearoyl-sn-glycero-3-phosphocholine (MESH:C010942), GTP (MESH:D006160), Bis-Tris (MESH:C026272), acetonitrile (MESH:C032159), Triton X-100 (MESH:D017830), N (MESH:D009584), DPBS (MESH:C012939), Nucleoside (MESH:D009705), agarose (MESH:D012685), ALC-0159 (MESH:C000712827), LPS (MESH:D008070), Lipid (MESH:D008055), PFA (MESH:C003043), sucrose (MESH:D013395), CO2 (MESH:D002245), glutamine (MESH:D005973), SYBR Green (MESH:C098022), gadolinium (MESH:D005682), ATP (MESH:D000255), calcium (MESH:D002118), ROS (MESH:D017382), MitoSOX (MESH:C521281), DMSO (MESH:D004121), spermidine (MESH:D013095), sodium acetate (MESH:D019346), PBS (MESH:D007854), CTP (MESH:D003570), sodium citrate (MESH:D000077559), superoxide (MESH:D013481), CleanCap AG (-), sodium hypochlorite (MESH:D012973), ALC-0315 (MESH:C000712847)
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Gammacoronavirus (genus) [taxon 694013], Mus musculus (house mouse, species) [taxon 10090], Photinus pyralis (common eastern firefly, species) [taxon 7054], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** R0703L, C) of 3
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), AC16 — Homo sapiens (Human), Transformed cell line (CVCL_HA69), BNT162b2 — Mus musculus (Mouse), Hybridoma (CVCL_J920), U343 — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_S471), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), AC16 cardiomyocytes — Coturnix japonica (Japanese quail), Transformed cell line (CVCL_J504), HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045)

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## References

76 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963247/full.md

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Source: https://tomesphere.com/paper/PMC12963247