# From synapse to system: mechanistic pathways of neural signaling dysfunction in psychiatric disorders

**Authors:** Rohan Gupta, Niraj Kumar Jha, Naveen Kumar, Rupak Nagraik, Karthikeyan Ravi

PMC · DOI: 10.3389/fcell.2026.1762930 · Frontiers in Cell and Developmental Biology · 2026-02-20

## TL;DR

This paper explores how disruptions in neural signaling at multiple levels contribute to psychiatric disorders and how integrating various scientific methods can lead to better precision treatments.

## Contribution

The paper introduces a framework connecting molecular and systems-level neural signaling disruptions in psychiatric disorders using genomics, connectomics, and AI.

## Key findings

- Receptor dysregulation and intracellular pathway changes lead to network dysconnectivity in psychiatric disorders.
- Genetic variations in genes like CACNA1C and DISC1 contribute to network vulnerability and clinical heterogeneity.
- Integrated methods using AI and connectomics help identify individualized signaling fingerprints for precision psychiatry.

## Abstract

Psychiatric disorders are increasingly viewed as network-level brain diseases resulting from disruptions in neural signaling across various hierarchies, including molecular, synaptic, circuit, and systems levels. Evidence indicates that receptor dysregulation, abnormal intracellular pathways, and changes in ion channel activity lead to widespread network dysconnectivity, resulting in cognitive, emotional, and behavioral deficits. This review integrates advancements in genomics, transcriptomics, connectomics, and computational modeling to establish a framework for understanding signaling abnormalities in major psychiatric disorders. Further, this study investigates essential molecular and cellular processes such as synaptic plasticity, receptor-mediated communication, intracellular signaling cascades, and neuroimmune interactions, and connects these to disturbances in oscillatory dynamics, circuit architecture, and overall brain network organization. Additionally, neuroimaging and graph-theoretic studies consistently demonstrate an excitation–inhibition imbalance, atypical synaptic pruning, impaired oscillatory synchrony, and maladaptive connectivity within networks, including the default mode, salience, and fronto-limbic systems, across schizophrenia, depression, bipolar disorder, anxiety, and autism spectrum disorders. Moreover, genetic and epigenetic variations in signaling genes, such as CACNA1C, GRIN2B, and DISC1, along with developmental and environmental factors, contribute to network vulnerability and clinical heterogeneity. Emerging artificial intelligence and multimodal integration methods facilitate the identification of individualized “signaling fingerprints,” which connect molecular perturbations to systems-level dysfunction. This research enhances precision psychiatry and guides targeted interventions based on neuromodulation, molecular mechanisms, and biomarkers.

Multilevel disturbances in neuropsychiatric diseases encompass molecular, synaptic, and cellular levels, resulting in circuit-level dysconnectivity and modified whole-brain connectomes. Impaired neurotransmission, abnormal synaptic signaling, and impaired neural communication lead to functional network imbalance. Further, integrated methodologies that merge genomes, connectomics, and AI modeling with targeted neuromodulation, molecular treatments, and biomarker methods seek to connect molecular dysfunctions with a systems-level comprehension and inform precision interventions in neuropsychiatric disorders.Diagram illustrating brain research from molecular, synaptic, and cellular dysfunctions to neural circuit interactions, connectome mapping, and integrated approaches including genomics, connectomics, artificial intelligence modeling, neuromodulation, molecular therapies, and biomarker strategies.

Multilevel disturbances in neuropsychiatric diseases encompass molecular, synaptic, and cellular levels, resulting in circuit-level dysconnectivity and modified whole-brain connectomes. Impaired neurotransmission, abnormal synaptic signaling, and impaired neural communication lead to functional network imbalance. Further, integrated methodologies that merge genomes, connectomics, and AI modeling with targeted neuromodulation, molecular treatments, and biomarker methods seek to connect molecular dysfunctions with a systems-level comprehension and inform precision interventions in neuropsychiatric disorders.

## Linked entities

- **Genes:** CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775], GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904], DISC1 (DISC1 scaffold protein) [NCBI Gene 27185]
- **Diseases:** schizophrenia (MONDO:0005090), depression (MONDO:0002050), bipolar disorder (MONDO:0004985), anxiety (MONDO:0005618)

## Full-text entities

- **Genes:** KCNN3 (potassium calcium-activated channel subfamily N member 3) [NCBI Gene 3782] {aka KCa2.3, SK3, SKCA3, ZLS3, hSK3}, MIR137 (microRNA 137) [NCBI Gene 406928] {aka MIRN137, miR-137}, CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, NTF3 (neurotrophin 3) [NCBI Gene 4908] {aka HDNF, NGF-2, NGF2, NT-3, NT3}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775] {aka CACH2, CACN2, CACNA1C-IT2, CACNL1A1, CCHL1A1, CaV1.2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, HDAC3 (histone deacetylase 3) [NCBI Gene 8841] {aka HD3, KDAC3, RPD3, RPD3-2}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, DISC1 (DISC1 scaffold protein) [NCBI Gene 27185] {aka C1orf136, SCZD9}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, CAMP (cathelicidin antimicrobial peptide) [NCBI Gene 820] {aka CAP-18, CAP18, CRAMP, FALL-39, FALL39, HSD26}, GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904] {aka DEE27, EIEE27, GluN2B, MRD6, NMDAR2B, NR2B}, KCNQ2 (potassium voltage-gated channel subfamily Q member 2) [NCBI Gene 3785] {aka BFNC, DEE7, EBN, EBN1, ENB1, HNSPC}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RELN (reelin) [NCBI Gene 5649] {aka ETL7, LIS2, PRO1598, RL}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757] {aka ERG-1, ERG1, H-ERG, HERG, HERG1, Kv11.1}, SHANK2 (SH3 and multiple ankyrin repeat domains 2) [NCBI Gene 22941] {aka AUTS17, CORTBP1, CTTNBP1, ProSAP1, SHANK, SPANK-3}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PVALB (parvalbumin) [NCBI Gene 5816] {aka D22S749}, MIR132 (microRNA 132) [NCBI Gene 406921] {aka MIRN132, miRNA132, mir-132}, NR3C1 (nuclear receptor subfamily 3 group C member 1) [NCBI Gene 2908] {aka GCCR, GCR, GCRST, GR, GRL}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, NTRK2 (neurotrophic receptor tyrosine kinase 2) [NCBI Gene 4915] {aka DEE58, EIEE58, GP145-TrkB, OBHD, TRKB, trk-B}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, CACNA1H (calcium voltage-gated channel subunit alpha1 H) [NCBI Gene 8912] {aka CACNA1HB, Cav3.2, ECA6, EIG6, HALD4}
- **Diseases:** compulsive behaviors (MESH:D003193), neurotransmitter imbalances (MESH:D000137), hypoactive (MESH:D020018), infection (MESH:D007239), Tourette's syndrome (MESH:D005879), psychosis (MESH:D011618), neuropsychiatric (MESH:C000631768), neurotransmitter deficiencies (MESH:D007153), delusions (MESH:D063726), nutritional deficiencies (MESH:D044342), psychotic phenomena (MESH:C566007), mood and psychotic disorders (MESH:D000341), mental diseases (MESH:D008607), brain diseases (MESH:D001927), cognitive and perceptual disturbances (MESH:D010468), LTD (MESH:D000088562), mitochondria (MESH:C564971), hallucinations (MESH:D006212), movement disorders (MESH:D009069), Cognitive deficits (MESH:D003072), memory impairment (MESH:D008569), neuronal or synaptic dysfunction (MESH:C536122), immune dysregulation (OMIM:614878), neurodevelopmental disorder (MESH:D002658), bipolar (MESH:D001714), PV (MESH:D000377), cortical (MESH:D054220), ion channel dysfunction (MESH:D020513), Depression (MESH:D003866), OCD (MESH:D009771), calcium dysregulation (MESH:D002128), autism (MESH:D001321), , and behavioral deficits (MESH:D019958), neuroinflammation (MESH:D000090862), SCZ (MESH:D012559), anxiety (MESH:D001007), neuronal atrophy (MESH:D001284), Central Nervous System (MESH:D002493), channelopathies (MESH:D053447), GNNs (MESH:D015441), impairments (MESH:D060825), behavioral abnormalities (MESH:D001523), ASD (MESH:D000067877), anhedonia (MESH:D059445), mitochondrial dysfunction (MESH:D028361), Chronic inflammation (MESH:D007249), psychiatric and neurodegenerative disorders (MESH:D019636), neuropsychiatric diseases (MESH:D004194), anxiety disorders (MESH:D001008), synaptic abnormalities (MESH:D012183), emotional dysregulation (MESH:D021081), neurotransmitter deficits (MESH:D009461), MDD (MESH:D003865), PTSD (MESH:D013313), hyperactivity (MESH:D006948), ion channel (MESH:C538353), AI (MESH:C538142), , affective, and behavioral dysfunction (MESH:D019964), rumination (MESH:D000079562)
- **Chemicals:** Cl- (MESH:D002713), K (MESH:D011188), Na+ (MESH:D012964), AMPA (MESH:D018350), 3-hydroxy-5-methyl-4-isoxazolepropionic acid (-), serotonin (MESH:D012701), Calcium (MESH:D002118), ROS (MESH:D017382), NAD+ (MESH:D009243), dopamine (MESH:D004298), lipids (MESH:D008055), Minocycline (MESH:D008911), ATP (MESH:D000255), Chloride (MESH:D002712), N-methyl-D-aspartate (MESH:D016202), glutamate (MESH:D018698)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12963065/full.md

## References

277 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963065/full.md

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Source: https://tomesphere.com/paper/PMC12963065