# Restricting Synaptotagmin‐3 Internalization Mitigates Cerebral Ischemia/Reperfusion Injury by Curtailed Neuronal Apoptosis and Microglial Re‐Programming

**Authors:** Hua Xu, Hongbo Mi, Rong Cheng, Tiantian Gui, Fangzhou Hu, Yi Yang, Jian Cheng, Qun Xue

PMC · DOI: 10.1002/cns.70815 · CNS Neuroscience & Therapeutics · 2026-03-05

## TL;DR

A peptide that blocks Synaptotagmin-3 internalization reduces brain damage after stroke by protecting neurons and reprogramming immune cells.

## Contribution

A novel therapeutic strategy for stroke by inhibiting Synaptotagmin-3 internalization to protect neurons and reprogram microglia.

## Key findings

- Peptide 3Y reduced infarct volume, brain edema, and improved neurological deficits in stroke models.
- 3Y suppressed neuronal apoptosis and shifted microglia to an anti-inflammatory state via the cAMP pathway.
- In vitro, 3Y protected neurons and induced microglia to adopt a protective, TGF-β1-secreting phenotype.

## Abstract

Ischemic stroke is a major global cause of disability and death. Synaptotagmin‐3 (Syt3), a synaptic calcium sensor, exacerbates ischemic injury by promoting pathological glutamate release. This study investigated the potential neuroprotective effect of restriction of Syt3 internalization on neuronal apoptosis and microglial reprogramming following ischemia/reperfusion (I/R).

The effects of Tat‐GluA2‐3Y (3Y), a cell‐permeable peptide inhibitor of Syt3 internalization, were studied in a mouse model of middle cerebral artery occlusion/reperfusion (MCAO/R) and in oxygen–glucose deprivation/reperfusion (OGD/R)‐induced HT22 and BV2 cells.

The peptide 3Y treatment significantly reduced infarct volume, brain edema, and improved neurological deficits. Additionally, it reduced neuronal apoptosis and also inhibited neuroinflammation by down‐regulating the level of IL‐1b, TNF‐a, and iNOS but up‐regulating the level of TGF‐b1 and Arg‐1. Single‐nucleus RNA sequencing of the peri‐infarct region revealed a dual mechanism: 3Y suppressed pro‐apoptotic gene programs in neurons and facilitated the transformation between different phenotypes of microglia via the cAMP pathway from a pro‐inflammatory to an anti‐inflammatory and immune‐protective state. In vitro, 3Y attenuated oxygen–glucose deprivation‐induced neuronal death and instructed microglia to adopt a protective, TGF‐β1‐secreting phenotype.

Collectively, our findings establish the inhibition of Syt3 internalization as a novel therapeutic strategy that concurrently protects neurons and reprograms the microglial immune response, offering a promising dual‐mechanism approach for acute stroke therapy.

Restriction of Syt3 internalization by peptide 3Y conferred robust neuroprotection against cerebral ischemia/reperfusion injury. Mechanistically, 3Y suppressed neuronal apoptosis fundamentally, and additionally, these salvaged neurons orchestrated and remodulated the transformation of surrounding microglia toward an anti‐inflammatory and immunoregulatory‐oriented direction to mitigate neuronal damage immediately.

## Linked entities

- **Genes:** SYT3 (synaptotagmin 3) [NCBI Gene 84258], IL1B (interleukin 1 beta) [NCBI Gene 3553], TNF (tumor necrosis factor) [NCBI Gene 7124], NOS2 (nitric oxide synthase 2) [NCBI Gene 4843], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040], ARG1 (arginase 1) [NCBI Gene 383]
- **Proteins:** SYTC (Calcium-dependent lipid-binding (CaLB domain) family protein), TGFB1 (transforming growth factor beta 1)
- **Diseases:** ischemic stroke (MONDO:1060198)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Atp1a1 (ATPase, Na+/K+ transporting, alpha 1 polypeptide) [NCBI Gene 11928] {aka Atpa-1}, Cd200r1 (CD200 receptor 1) [NCBI Gene 57781] {aka CD200R, Mox2r, OX2R}, GRIA2 (glutamate ionotropic receptor AMPA type subunit 2) [NCBI Gene 2891] {aka GLUR2, GLURB, GluA2, GluR-K2, HBGR2, NEDLIB}, H3c7 (H3 clustered histone 7) [NCBI Gene 260423] {aka H3.2-221, H3c13, H3c14, H3c15, H3c2, H3c3}, Kynu (kynureninase) [NCBI Gene 70789] {aka 4432411A05Rik}, Casp9 (caspase 9) [NCBI Gene 12371] {aka APAF-3, CASP-9, Caspase-9, ICE-LAP6, Mch6}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Il1a (interleukin 1 alpha) [NCBI Gene 16175] {aka Il-1a}, Bax (BCL2-associated X protein) [NCBI Gene 12028], Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Ccl5 (C-C motif chemokine ligand 5) [NCBI Gene 20304] {aka MuRantes, RANTES, SISd, Scya5, TCP228}, Cxcl10 (C-X-C motif chemokine ligand 10) [NCBI Gene 15945] {aka C7, CRG-2, INP10, IP-10, IP10, Ifi10}, Iba1 (induction of brown adipocytes 1) [NCBI Gene 114737], Ifi207 (interferon activated gene 207) [NCBI Gene 226691] {aka Pyhin-A, pyhinA}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}, Ccr7 (C-C motif chemokine receptor 7) [NCBI Gene 12775] {aka CC-CKR-7, CCR-7, CD197, Cdw197, Cmkbr7, EBI1}, Cd40 (CD40 antigen) [NCBI Gene 21939] {aka Bp50, GP39, HIGM1, IGM, IMD3, T-BAM}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, Cd200 (CD200 molecule) [NCBI Gene 17470] {aka Mox2, OX2}, Cdk6 (cyclin dependent kinase 6) [NCBI Gene 12571] {aka Crk2}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, PLAT (plasminogen activator, tissue type) [NCBI Gene 5327] {aka T-PA, TPA}, Ctsb (cathepsin B) [NCBI Gene 13030] {aka APPM, CB}, Irf5 (interferon regulatory factor 5) [NCBI Gene 27056] {aka mirf5}, Creb1 (cAMP responsive element binding protein 1) [NCBI Gene 12912] {aka 2310001E10Rik, 3526402H21Rik, Creb, Creb-1}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, SYT3 (synaptotagmin 3) [NCBI Gene 84258] {aka SytIII}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Syt3 (synaptotagmin III) [NCBI Gene 20981] {aka sytIII}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Lrp1 (low density lipoprotein receptor-related protein 1) [NCBI Gene 16971] {aka A2mr, CD91, Lrp, b2b1554Clo}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, Irf1 (interferon regulatory factor 1) [NCBI Gene 16362] {aka Irf-1}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Cd209e (CD209e antigen) [NCBI Gene 170780] {aka SIGNR4, mSIGNR4}, Tgfbr3 (transforming growth factor, beta receptor III) [NCBI Gene 21814] {aka 1110036H20Rik, TBRIII}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, Ctsc (cathepsin C) [NCBI Gene 13032] {aka CatC, DPP1, DPPI}, TAT (tyrosine aminotransferase) [NCBI Gene 6898], Ido1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 15930] {aka Ido, Indo}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Pdgfb (platelet derived growth factor subunit B) [NCBI Gene 18591] {aka PDGF-2, PDGF-B, Sis, c-sis}, Tat (tyrosine aminotransferase) [NCBI Gene 234724], Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Aif1 (allograft inflammatory factor 1) [NCBI Gene 11629] {aka AIF-1, D17H6S50E, G1, Iba1}
- **Diseases:** ischemia (MESH:D007511), Neurological dysfunction (MESH:D009461), Fatigue (MESH:D005221), Neurobehavioral Deficits (MESH:D019954), acute stroke (MESH:D020521), Brain Edema (MESH:D001929), hypoxic (MESH:D002534), hemorrhagic (MESH:D006470), neuroinflammation (MESH:D000090862), Cerebral Ischemia (MESH:D002545), somatosensory and motor deficits (MESH:D020886), tumor (MESH:D009369), Neuropsychiatric Diseases (MESH:D004194), neurodegeneration (MESH:D019636), Inflammatory (MESH:D007249), cerebral ischemic (MESH:D002547), neurological impairment (MESH:D009422), dislocation (MESH:D004204), Neuronal Degeneration (MESH:D009410), inflammatory cytokine (MESH:D000080424), Peri (MESH:D057873), Infarction (MESH:D007238), cerebrovascular disease (MESH:D002561), OGD (MESH:C536050), ischemic injury (MESH:D017202), Foot faults (MESH:D005530), Cerebral Infarction (MESH:D002544), R (MESH:C580424), injured brain (MESH:D001927), death (MESH:D003643), MCAO/R (MESH:D020244), I/R (MESH:D015427)
- **Chemicals:** silicone (MESH:D012828), DTT (MESH:D004229), sodium dodecyl sulfate (MESH:D012967), glutamate (MESH:D018698), isoflurane (MESH:D007530), TRIzol (MESH:C411644), H89 (MESH:C063509), water (MESH:D014867), Triton X-100 (MESH:D017830), streptomycin (MESH:D013307), polyacrylamide (MESH:C016679), xylene (MESH:D014992), nitrogen (MESH:D009584), 2, 3, 5-triphenyl tetrazolium chloride (MESH:C009591), DPX (MESH:C027512), oxygen (MESH:D010100), paraffin (MESH:D010232), saline (MESH:D012965), RB (MESH:D012413), D-glucose (MESH:D005947), 4',6-diamidino-2-phenyl-indole (MESH:C007293), Alexa Fluor 546 (MESH:C481052), calcium (MESH:D002118), Tween-20 (MESH:D011136), polyvinylidene difluoride (MESH:C024865), PFA (MESH:C003043), carbon dioxide (MESH:D002245), FJC (MESH:C534582), KMNO4 (MESH:D011196), Alexa Fluor 488 (MESH:C000711379), dUTP (MESH:C027078), Fingolimod hydrochloride (MESH:D000068876), penicillin (MESH:D010406), Abcam (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C-60 C, C +- 1 C, start of 22
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), BV2 — Mus musculus (Mouse), Transformed cell line (CVCL_0182), HT22 — Mus musculus (Mouse), Transformed cell line (CVCL_0321)

## Full text

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## Figures

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## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC12963021/full.md

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Source: https://tomesphere.com/paper/PMC12963021