# The role of miRNAs in the development of brain metastases originating from lung adenocarcinoma

**Authors:** Bernadett Torner, Álmos Klekner, István Balogh, András Penyige, Dóra Géczi, Tekla Gáspár, Gréta Geszti, Zsuzsanna Birkó

PMC · DOI: 10.3389/fgene.2026.1769972 · Frontiers in Genetics · 2026-02-20

## TL;DR

This study identifies miRNAs associated with brain metastases from lung adenocarcinoma, offering potential diagnostic and therapeutic insights.

## Contribution

The study identifies ten miRNAs with altered expression in lung adenocarcinoma brain metastases, including six with stepwise dysregulation along the metastatic progression.

## Key findings

- 229 miRNAs were differentially expressed in LUAD brain metastases compared to controls.
- Ten miRNAs were validated to show significant differences in expression between LUAD-BM and normal brain tissue.
- Six miRNAs showed stepwise dysregulation along the normal lung–LUAD–LUAD-BM progression axis.

## Abstract

Brain metastases (BMs) represent most malignant lesions of the central nervous system. Lung cancer—particularly lung adenocarcinoma (LUAD, ∼25%)—is the most common source of BMs. MicroRNAs (miRNAs) play a crucial role in regulating gene expression, thereby contributing to tumor progression and metastatic spread. Identifying these regulatory molecules may enable a deeper understanding of the mechanisms driving LUAD brain metastasis (LUAD-BM) development and reveal therapeutic targets to prevent or limit disease progression.

Next-generation RNA sequencing (RNA-seq) was performed on six LUAD-BM and six non-tumorous human brain tissue samples to assess miRNA expression profiles. Additionally, RNA-seq data from 20 primary LUAD and 15 normal lung tissue samples were obtained from The Cancer Genome Atlas (TCGA) database. MiRNAs showing the most pronounced alterations in LUAD-BM samples were selected for validation by real time quantitative polymerase chain reaction (RT-qPCR).

Analysis of RNA-seq data identified 229 differentially expressed (DE) miRNAs between LUAD-BM and control samples. Functional annotation analysis indicated that these DE miRNAs are key regulators of tumorigenesis and metastasis. Using the Mann–Whitney U test, ten miRNAs were confirmed to differ significantly between LUAD-BM and normal brain tissue. Receiver operating characteristic (ROC) curve analysis demonstrated their diagnostic potential. Among the ten validated miRNAs, miR-200c-3p, miR-146b-5p, and miR-3934-5p showed distinct expression patterns between primary LUAD and LUAD-BM, while miR-10a-5p, miR-210-3p, and miR-130b-3p exhibited stepwise dysregulation along the normal lung–LUAD–LUAD-BM axis, suggesting their involvement in metastatic progression.

We identified ten miRNAs that showed preliminary ability to differentiate LUAD-BM from normal brain tissue. These findings indicate possible diagnostic and therapeutic implications. Among these, six miRNAs showed significant expression changes along the normal control–primary LUAD–LUAD-BM axis, highlighting their potential as biomarkers and therapeutic targets in BM development.

## Linked entities

- **Diseases:** lung adenocarcinoma (MONDO:0005061)

## Full-text entities

- **Genes:** CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, SEPTIN2 (septin 2) [NCBI Gene 4735] {aka DIFF6, NEDD-5, NEDD5, Pnutl3, SEPT2, Septin-2}, FOXO3 (forkhead box O3) [NCBI Gene 2309] {aka AF6q21, FKHRL1, FKHRL1P2, FOXO2, FOXO3A}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, TXNRD1 (thioredoxin reductase 1) [NCBI Gene 7296] {aka GRIM-12, TR, TR1, TRXR1, TXNR, TXNR1}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, MIR195 (microRNA 195) [NCBI Gene 406971] {aka MIRN195, miRNA195, mir-195}, HDGF (heparin binding growth factor) [NCBI Gene 3068] {aka HMG1L2}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, MIR3934 (microRNA 3934) [NCBI Gene 100500873], MIR503 (microRNA 503) [NCBI Gene 574506] {aka MIRN503, hsa-mir-503, mir-503}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, USF1 (upstream transcription factor 1) [NCBI Gene 7391] {aka FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF}, MIR214 (microRNA 214) [NCBI Gene 406996] {aka MIRN214, miRNA214, mir-214}, IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, KDM4C (lysine demethylase 4C) [NCBI Gene 23081] {aka GASC1, JHDM3C, JMJD2C, TDRD14C}, SMAD2 (SMAD family member 2) [NCBI Gene 4087] {aka CHTD8, JV18, JV18-1, LDS6, MADH2, MADR2}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, NFE2 (nuclear factor, erythroid 2) [NCBI Gene 4778] {aka NF-E2, p45}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MIR15A (microRNA 15a) [NCBI Gene 406948] {aka MIRN15A, hsa-mir-15a, miRNA15A, mir-15a}, FOXK1 (forkhead box K1) [NCBI Gene 221937] {aka FOXK1L}, MIR124-3 (microRNA 124-3) [NCBI Gene 406909] {aka MIRN124-3, MIRN124A3, mir-124-3}, TIMP2 (TIMP metallopeptidase inhibitor 2) [NCBI Gene 7077] {aka CSC-21K, DDC8}, MIR196B (microRNA 196b) [NCBI Gene 442920] {aka MIRN196B, miR-196b, miRNA196B}, MIR130B (microRNA 130b) [NCBI Gene 406920] {aka MIRN130B, mir-130b}, MIR210 (microRNA 210) [NCBI Gene 406992] {aka MIRN210, mir-210}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, MIR199A2 (microRNA 199a-2) [NCBI Gene 406977] {aka MIR-199-s, MIRN199A2, mir-199a-2}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, MIR200C (microRNA 200c) [NCBI Gene 406985] {aka MIRN200C, mir-200c}, NGF (nerve growth factor) [NCBI Gene 4803] {aka Beta-NGF, HSAN5, NGFB}, DEPDC1 (DEP domain containing 1) [NCBI Gene 55635] {aka DEP.8, DEPDC1-V2, DEPDC1A, SDP35}, STK11 (serine/threonine kinase 11) [NCBI Gene 6794] {aka LKB1, PJS, hLKB1}, SPATA2 (spermatogenesis associated 2) [NCBI Gene 9825] {aka PD1, PPP1R145, tamo}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, MIR95 (microRNA 95) [NCBI Gene 407052] {aka MIRN95, hsa-mir-95, miR-95}, MIR10A (microRNA 10a) [NCBI Gene 406902] {aka MIRN10A, hsa-mir-10a, miRNA10A, mir-10a}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}
- **Diseases:** BMs (MESH:D001932), tumor grade II (MESH:D001254), lymph node metastasis (MESH:D008207), breast cancer (MESH:D001943), tumor suppressor candidate 7 (OMIM:601308), brain metastasis (MESH:D009362), nor-mal brain (MESH:D001927), NSCLC (MESH:D002289), hypoxic (MESH:D002534), LUAD (MESH:D000077192), tumorigenesis (MESH:D063646), Cancer (MESH:D009369), AD (MESH:D000544), Lung cancer (MESH:D008175), glioma (MESH:D005910)
- **Chemicals:** DDP (MESH:D002945), Qiazol (-), osimertinib (MESH:C000596361)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** LUAD — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_WN45), H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12962924/full.md

## References

82 references — full list in the complete paper: https://tomesphere.com/paper/PMC12962924/full.md

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Source: https://tomesphere.com/paper/PMC12962924