# Transcriptional repression of reaper by Stand still ensures female germline development in Drosophila

**Authors:** Masaya Matsui, Shinichi Kawaguchi, Toshie Kai, Giovanni Bosco, Giovanni Bosco

PMC · DOI: 10.1371/journal.pgen.1012041 · 2026-03-05

## TL;DR

This study shows how the gene stand still prevents unnecessary cell death in female fruit fly germline cells by controlling the reaper gene.

## Contribution

The study identifies stand still as a novel regulator of apoptosis in the Drosophila female germline.

## Key findings

- Loss of stand still leads to increased reaper expression and germline cell death in Drosophila.
- Stand still represses reaper transcription via its N-terminal zinc finger domain.
- Undifferentiated germline cells maintain reaper repression through a chromatin-based silencing mechanism.

## Abstract

Apoptosis plays a central role in shaping tissues and preserving cellular integrity across developmental stages. In the germline, its precise regulation is critical to ensure both the elimination of aberrant cells and the maintenance of reproductive capacity. However, the molecular mechanisms that control apoptotic susceptibility in germline cells remain poorly defined. Here, we identify stand still (stil) as a female germline-specific regulator of apoptosis in Drosophila. Loss of stil leads to near-complete depletion of germline cells at the time of eclosion, associated with upregulation of the pro-apoptotic gene reaper (rpr) and activation of caspase-dependent cell death. Reporter assays in S2 cells show that Stil directly represses rpr transcription through its N-terminal BED-type zinc finger domain. The Dietera-restricted conservation of stil and rpr is consistent with a functional association. Despite the absence of stil, undifferentiated germline cells remain resistant to apoptosis. Analysis of publicly available chromatin data reveals that the rpr locus in these cells resides in a closed, H3K9me3-enriched chromatin state, suggesting a Stil-independent mode of transcriptional silencing. Together, our findings uncover two distinct mechanisms that protects the female germline from rpr-dependent apoptosis: Stil-mediated transcriptional repression that operates in both undifferentiated and differentiated germline cells, and an additional chromatin-based silencing mechanism that functions specifically in undifferentiated cells. This work provides new insights into the interplay between transcriptional and chromatin-based regulations that maintain germline cell identity and survival.

Apoptosis eliminates unnecessary or abnormal cells, yet its inappropriate activation in germline cells would be highly detrimental to reproduction. A finely tuned mechanism that permits cell death only when necessary while preventing its harmful activation is indispensable for maintaining fertility and species continuity. In this study, we identified stand still (stil) as a factor that prevents inappropriate activation of the pro-apoptotic gene reaper (rpr) in the female germline of Drosophila. Loss of stil resulted in near-complete depletion of ovarian germline cells at eclosion, accompanied by elevated rpr expression and activation of caspase-dependent apoptosis. Furthermore, we demonstrate that Stil directly represses rpr transcription through its N-terminal zinc finger domain. In addition, undifferentiated germline cells, including germline stem cells, exhibit a closed chromatin state at the rpr locus, suggesting that rpr is intrinsically less accessible for transcription in these cells. Together, this two-layered mechanism suggests that susceptibility to cell death is tuned according to developmental stage, providing a conceptual framework for understanding reproductive and developmental abnormalities as well as diseases associated with dysregulated cell death.

## Linked entities

- **Genes:** STIL (STIL centriolar assembly protein) [NCBI Gene 6491], rpr (reaper) [NCBI Gene 40015], EXTL3 (exostosin like glycosyltransferase 3) [NCBI Gene 2137]
- **Proteins:** STIL (STIL centriolar assembly protein)
- **Species:** Drosophila (taxon 7215)

## Full-text entities

- **Genes:** tub (tube) [NCBI Gene 40554] {aka CG10520, Dmel\CG10520, TUBE, Tube}, Act5C (Actin 5C) [NCBI Gene 31521] {aka A, A4V404_DROME, ACT, ACT1_DROME, Ac5C, Act}, Dronc (Death regulator Nedd2-like caspase) [NCBI Gene 39173] {aka CG8090, CG8091, Dmel\CG8091, Dronc/Casp9, Nc, Nc\Dronc}, tkv (thickveins) [NCBI Gene 33753] {aka Atkv, Atr25D, Brk25D, Brk25D1, Brk25D2, CG14026}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Fs(3)Dam (Female sterile (3) Damasa) [NCBI Gene 47790] {aka Dam, Fs(3)Damasa}, Nos (Nitric oxide synthase) [NCBI Gene 34495] {aka CG6713, DNOS, DNOS1, Dmel\CG6713, NOS1, NOS2}, alphaTub84B (alpha-Tubulin at 84B) [NCBI Gene 40848] {aka 1t, ALPHA 84C, Alpha-Tubulin84B, BEST:LD32507, CG1913, DM1alpha}, Sxl (Sex lethal) [NCBI Gene 3772180] {aka CG14425, CG18350, CG33070, CG43770, Dm-Sxl, DmSxl}, Dfd (Deformed) [NCBI Gene 40832] {aka BG:DS00276.5, CG2189, DmDfd, Dmel\CG2189, EbR11, l(3)84Ae}, Cdk5alpha (Cdk5 activator-like protein) [NCBI Gene 34385] {aka CG5387, Cdk5a, D-p35, Dmel\CG5387, Dp35, P35}, skl (sickle) [NCBI Gene 40016] {aka BcDNA:RE14076, CG13701, Dmel\CG13701, meph, veto}, hid (head involution defective) [NCBI Gene 40009] {aka CG5123, Dmel\CG5123, Hid1, W, hid1, his}, Myc (Myc) [NCBI Gene 31310] {aka CG10798, D-Myc, DM, DMYc, Diminutive, Dm}, vas (vasa) [NCBI Gene 26067080] {aka BG:DS00929.14, CG3506, CG43081, CG46283, DDX4, DmRH25}, rdx (roadkill) [NCBI Gene 41704] {aka 0869/09, BEST:GM07940, CG10235, CG12537, CG9924, D-SPOP}, Dref (DNA replication-related element factor) [NCBI Gene 34328] {aka CG5838, DmDREF, Dmel\CG5838, Dmel_DREF, dDREF, p80}, abd-A (abdominal A) [NCBI Gene 42037] {aka Abd A, AbdA, Abda, BX-C, CG10325, Cbxd}, bsk (basket) [NCBI Gene 44801] {aka Basket, CG5680, D-JNK, D-junk, DBSK/JNK, DJNK}, wit (wishful thinking) [NCBI Gene 44096] {aka 1262/15, ALK3/BMPRII, BMP, CG10776, Dmel\CG10776, SE20}, Duox (Dual oxidase) [NCBI Gene 33477] {aka CG3131, Cy, Dmel\CG3131, dDuox, dduox, l(2)23Bb}, p53 (p53) [NCBI Gene 2768677] {aka CG10873, CG31325, CG33336, D-p53, DMP53, Dm-P53}, Mbl2 (mannose-binding lectin (protein C) 2) [NCBI Gene 17195] {aka L-MBP, MBL, MBL-C, MBP-C, RARF/P28A}, otu (ovarian tumor) [NCBI Gene 31789] {aka CG12743, DROOTUA, Dmel\CG12743, K, fs(1)231, fs(1)23l}, RpL32 (Ribosomal protein L32) [NCBI Gene 43573] {aka 143250_at, BcDNA:RH03940, CG7939, Dmel\CG7939, L32, L32e}, rpr (reaper) [NCBI Gene 40015] {aka CG4319, Dmel\CG4319, Reaper, anon-WO0162936.19, rp}, Mad (Mothers against dpp) [NCBI Gene 33529] {aka 2/23, CG12399, Dmel\CG12399, E(zen)2, En(vvl), Mat}, Ubx (Ultrabithorax) [NCBI Gene 42034] {aka BX-C, Bxl, CG10388, Cbx, DUbx, Dm Ubx}, stil (stand still) [NCBI Gene 36380] {aka 152072_at, CG8592, Dmel\CG8592, Y10276}, Diap1 (Death-associated inhibitor of apoptosis 1) [NCBI Gene 39753] {aka 0736/01, 1065/03, CG12284, D-IAP1, D-iap1, DIAP}, grim (grim) [NCBI Gene 40014] {aka BcDNA:RE28551, CG4345, Dmel\CG4345, gri, grm}, BEAF-32 (Boundary element-associated factor of 32kD) [NCBI Gene 36645] {aka BEAF, BEAF 32, BEAF-32A, BEAF-32B, BEAF32, BEAF32A}, Drice (Death related ICE-like caspase) [NCBI Gene 43514] {aka CG7788, Dmel\CG7788, Drive, ICE, Ice, caspase 3}, shn (schnurri) [NCBI Gene 36171] {aka BEST:SD06302, CG7734, Dmel\CG7734, EP(2)2359, EP2359, SD06302}, hh (hedgehog) [NCBI Gene 42737] {aka CG4637, Dmel\CG4637, Dmhh, Hg, Mir, Mrt}, Ubi-p63E (Ubiquitin-63E) [NCBI Gene 38456] {aka CG11624, DmUb, DmUbi-p63E, Dmel\CG11624, UB, Ub}, Dcp-1 (Death caspase-1) [NCBI Gene 37729] {aka CG5370, DCP1, Dcp1, Dmel\CG5370, cDcp, cDcp-1}, bam (bag of marbles) [NCBI Gene 43038] {aka Bam-C, BamC, BamF, CG10422, Dmel\CG10422, alpha}, dpp (decapentaplegic) [NCBI Gene 33432] {aka BMP, Bmp, CG9885, DPP-C, Dm-DPP, DmDPP}
- **Diseases:** necrosis (MESH:D009336), reproductive and developmental abnormalities (MESH:D060737), GSC (MESH:D000092423), ovarian tumor (MESH:D010051), DamID (MESH:C538228), stil-deficient (MESH:D016706), cancer (MESH:D009369), head involution (MESH:D006258), tumorigenic (MESH:D002471)
- **Chemicals:** PVDF (MESH:C024865), SDS (MESH:D012967), isoamyl alcohol (MESH:C029683), HCl (MESH:D006851), DTT (MESH:D004229), Tween 20 (MESH:D011136), glucose (MESH:D005947), 4',6-diamidino-2-phenylindole (MESH:C007293), phenol (MESH:D019800), TRIzol (MESH:C411644), propionic acid (MESH:C029658), chloroform (MESH:D002725), paraformaldehyde (MESH:C003043), EDTA (MESH:D004492), Bromophenol blue (MESH:D001978), dUTP (MESH:C027078), fluorescein (MESH:D019793), streptomycin (MESH:D013307), Alexa Fluor 488 (MESH:C000711379), agar (MESH:D000362), Triton-X (MESH:D017830), CyO (-), Glycerol (MESH:D005990), penicillin (MESH:D010406)
- **Species:** Diptera (flies, order) [taxon 7147], Drosophila melanogaster (fruit fly, species) [taxon 7227], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** GTATG to ATATG at 12570993
- **Cell lines:** Schneider — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z231), 32C — Homo sapiens (Human), Amelanotic melanoma, Cancer cell line (CVCL_1097), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), stilEY16156 — Homo sapiens (Human), Orofacial cleft 1, Transformed cell line (CVCL_5Q63)

## Figures

13 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12962474/full.md

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Source: https://tomesphere.com/paper/PMC12962474