# Immunodominance is a poor predictor of vaccine-induced T follicular helper cell quality

**Authors:** Ming Z.M. Zheng, Hyon-Xhi Tan, Kathleen M. Wragg, Lydia Murdiyarso, Devaki Pilapitiya, Andrew Kelly, Robyn Esterbauer, Christopher A. Gonelli, Adam K. Wheatley, Jennifer A. Juno

PMC · DOI: 10.1016/j.ebiom.2026.106185 · 2026-02-26

## TL;DR

The study shows that not all CD4+ T cell epitopes provide equal help for strong antibody responses, challenging assumptions about immunodominance in vaccine design.

## Contribution

The study reveals that immunodominance is not a reliable indicator of CD4+ T cell help quality for B cells in vaccine contexts.

## Key findings

- Priming of naïve CD4+ T cells is efficient, but immunodominance does not predict quality of B cell help.
- A single MHC class II epitope can drive robust germinal center responses and high IgG titers.
- Multimerizing antigens on nanoparticles can unlock subdominant CD4+ T cell responses to support antibody production.

## Abstract

Rational engineering of vaccine immunogens to focus B cell responses on potently neutralising epitopes is a promising approach to improve the potency, breadth and durability of viral vaccines. Such strategies, however, can compromise vaccine immunogenicity through the unintended exclusion of CD4+ T cell epitopes, which are critical for the development of T follicular helper (TFH) cells and to support high affinity antibody production.

Using a prototypic influenza haemagglutinin (HA) stem immunogen lacking effective CD4+ T cell help in C57BL/6 mice, we interrogated the minimal requirements for T cell help needed to drive serological responses to vaccination.

We find that priming of naïve CD4+ T cells is markedly efficient, however the immunodominance of a given CD4+ T cell epitope is not predictive of the propensity to provide high quality help to antigen-specific B cells. In the context of soluble antigens, provision of a single MHC class II epitope is sufficient to drive robust germinal centre responses and serum IgG titres. However not all CD4+ epitopes provide equivalent levels of B cell help, despite priming comparable numbers of antigen-specific CD4+ T cells. Finally, we show multimerizing and arraying antigens on nanoparticle scaffolds unlocks highly subdominant, near-undetectable CD4+ T cell helper responses to support a T-dependent antibody response.

Our findings emphasise the importance of CD4+ T cell help for programming robust and durable humoural immunity, and provide crucial insights to guide the rational incorporation of favourable T cell epitopes into vaccines.

The study was funded by the 10.13039/501100000925NHMRC.

## Linked entities

- **Proteins:** CD4 (CD4 molecule), ha (hair bristles)

## Full-text entities

- **Genes:** Tcrb (T cell receptor beta chain) [NCBI Gene 21577] {aka TCRbeta, Tib}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Trbv31 (T cell receptor beta, variable 31) [NCBI Gene 269846] {aka Gm16809, Tcrb-V14}, Cd40lg (CD40 ligand) [NCBI Gene 21947] {aka CD154, CD40-L, Cd40l, HIGM1, IGM, IMD3}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, CXCR5 (C-X-C motif chemokine receptor 5) [NCBI Gene 100515679] {aka CD185}, THY1 (Thy-1 cell surface antigen) [NCBI Gene 100271931] {aka CD90, thy-1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CXCR5 (C-X-C motif chemokine receptor 5) [NCBI Gene 643] {aka BLR1, CD185, MDR15}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5) [NCBI Gene 80331] {aka CLN4, CLN4B, CSP, DNAJC5A, mir-941-2, mir-941-3}, RNF130 (ring finger protein 130) [NCBI Gene 55819] {aka G1RP, G1RZFP, GOLIATH, GP}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, Cd28 (CD28 antigen) [NCBI Gene 12487], Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Bcr (BCR activator of RhoGEF and GTPase) [NCBI Gene 110279] {aka 5133400C09Rik, mKIAA3017}
- **Diseases:** GC (MESH:D054331), influenza infections (MESH:D007251), malaria (MESH:D008288), HIV (MESH:D015658), infectious diseases (MESH:D003141), Infection (MESH:D007239), COVID-19 (MESH:D000086382)
- **Chemicals:** isoflurane (MESH:D007530), FL (MESH:D005459), oxygen (MESH:D010100), 3,3',5,5'-Tetramethylbenzidine (MESH:C021758), A438079 (MESH:C523668), Addavax (MESH:C000590912), streptomycin (MESH:D013307), CO2 (MESH:D002245), Tween 20 (MESH:D011136), formaldehyde (MESH:D005557), DMSO (MESH:D004121), sulphuric acid (MESH:C033158), CTV (-), penicillin (MESH:D010406), dasatinib (MESH:D000069439), acetone (MESH:D000096), carbohydrates (MESH:D002241)
- **Species:** LCMV [taxon 11623], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Human immunodeficiency virus 1 (no rank) [taxon 11676], Mus musculus (house mouse, species) [taxon 10090], Plasmodium (subgenus) [taxon 418103], Respiratory syncytial virus (no rank) [taxon 12814], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** Expi293 — Homo sapiens (Human), Transformed cell line (CVCL_D615), BL/6 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0157), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), H2 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_4100)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12962106/full.md

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Source: https://tomesphere.com/paper/PMC12962106