# Analysis of NDNF and SLC1A2 gene expression in the dorsolateral prefrontal cortex of individuals with autism

**Authors:** Ariel Moraes de Andrade, Larysy Raquelly Vidal de Souza, Rodrigo Freire Oliveira, Karina Maia Paiva, Felipe Porto Fiuza, Pedro Henrique Silva de Farias, Roque Ribeiro da Silva Júnior, Maria Vanessa Freitas Holanda, Thales Allyrio Araújo de Medeiros Fernandes, Paulo Leonardo Araújo de Góis Morais, José Rodolfo Lopes de Paiva Cavalcanti

PMC · DOI: 10.3389/fnins.2026.1694827 · 2026-02-16

## TL;DR

This study explores gene expression differences in the brain of individuals with autism, focusing on two genes linked to brain function and inflammation.

## Contribution

The study identifies altered SLC1A2 gene expression in autism, suggesting a potential link to neuroinflammation.

## Key findings

- SLC1A2 expression was significantly increased in individuals with autism.
- NDNF expression showed a non-significant trend toward lower levels in autism.
- Neuronal density was similar between autism and control groups.

## Abstract

This study investigated the expression of NDNF and SLC1A2 in the dorsolateral prefrontal cortex of individuals with Autism Spectrum Disorder (ASD), a region linked to executive functions, emotional regulation, social skills, and sensory processing.

Using data from the Allen Human Brain Atlas – Autism Study, 17 post-mortem cases (ASD: 9; controls: 8; ages 2–14) were analyzed with in situ hybridization and Nissl staining. Histological images were processed with FIJI-ImageJ and Ilastik software.

No significant differences in NDNF expression were observed, though a trend toward lower levels in ASD was noted. In contrast, SLC1A2 expression was significantly increased in ASD and showed age-related growth, possibly reflecting neuroinflammatory processes. Nissl staining indicated similar neuronal density between groups, suggesting that gene expression changes may reflect functional alterations rather than cell number.

These results highlight complex neurogenesis alterations in ASD and underscore the need for further research to identify biomarkers and potential therapeutic targets.

## Linked entities

- **Genes:** NDNF (neuron derived neurotrophic factor) [NCBI Gene 79625], SLC1A2 (solute carrier family 1 member 2) [NCBI Gene 6506]
- **Diseases:** Autism Spectrum Disorder (MONDO:0005258)

## Full-text entities

- **Genes:** NTF3 (neurotrophin 3) [NCBI Gene 4908] {aka HDNF, NGF-2, NGF2, NT-3, NT3}, Ndnf (neuron-derived neurotrophic factor) [NCBI Gene 68169] {aka A930038C07Rik, epidermacan}, SLC1A2 (solute carrier family 1 member 2) [NCBI Gene 6506] {aka DEE41, EAAT2, EIEE41, GLT-1, GLT1, HBGT}, SLC17A7 (solute carrier family 17 member 7) [NCBI Gene 57030] {aka BNPI, VGLUT1}, SLC1A1 (solute carrier family 1 member 1) [NCBI Gene 6505] {aka DCBXA, EAAC1, EAAT3, SCZD18, hEAAC1}, DLG4 (discs large MAGUK scaffold protein 4) [NCBI Gene 1742] {aka MRD62, PSD95, SAP-90, SAP90}, NDNF (neuron derived neurotrophic factor) [NCBI Gene 79625] {aka C4orf31, HH25, NORD}
- **Diseases:** neural toxicity (MESH:D064420), epilepsy (MESH:D004827), death (MESH:D003643), brain overgrowth (MESH:D001927), synaptic dysfunction (MESH:C536122), Developmental Disorders (MESH:D002658), restricted and repetitive behaviors (MESH:D002313), neuronal loss (MESH:D009410), social impairments (OMIM:300082), neurotoxicity (MESH:D020258), Autism (MESH:D001321), neuroinflammation (MESH:D000090862), neurodevelopmental condition (MESH:D020763), inflammatory (MESH:D007249), neurodegeneration (MESH:D019636), ASD (MESH:D000067877), developmental abnormalities (MESH:D006130)
- **Chemicals:** Nissl (-), digoxigenin (MESH:D004076), glutamate (MESH:D018698)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12961583/full.md

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Source: https://tomesphere.com/paper/PMC12961583