# Ubenimex synergizes with the PD-L1 blockade in gastric cancer by competitively binding LAP3 with UBE3A

**Authors:** Caixia Zhao, Jiaxin Li, Jinxiu Zheng, Ming Chi, Ying Shao, Yuxin Che, Wenjing Chen, Jie Dai, Chunxia Chen, Xiaoning Li, Likun Zan, Yu Shi, Yujing Duan, Lijun Yang, Tao Yang

PMC · DOI: 10.1038/s41419-026-08509-3 · 2026-02-26

## TL;DR

Ubenimex improves the effectiveness of PD-L1 blockade in gastric cancer by disrupting a protein interaction that helps cancer cells evade the immune system.

## Contribution

Ubenimex synergizes with PD-L1 blockade by competitively binding LAP3 with UBE3A, offering a novel combination therapy strategy for gastric cancer.

## Key findings

- Ubenimex enhances anti-PD-L1 therapy efficacy in a mouse model of gastric cancer.
- LAP3 promotes immune evasion by impairing CD8+ T cell infiltration and increasing PD-L1 expression.
- Ubenimex disrupts the LAP3-UBE3A interaction, restoring PD-L1 degradation and T cell activity.

## Abstract

Immune checkpoint inhibitors (ICIs), particularly PD-1/PD-L1 blockade, represent a cornerstone of treatment for advanced gastric cancer (GC). However, their clinical efficacy is hampered by low response rates and the development of both primary and acquired resistance, underscoring the need for innovative combination therapies. In this study, we investigate the potential of Ubenimex, an immunomodulator and inhibitor of leucyl aminopeptidase 3 (LAP3), in enhancing the therapeutic efficacy of PD-L1 blockade in GC. Using a syngeneic GC mouse model, we demonstrate that Ubenimex significantly augments the efficacy of anti-PD-L1 therapy. We further explore the role of LAP3 in GC progression and find that it is highly expressed in both GC tissues and cells, with elevated LAP3 levels correlating with poor prognosis. Functionally, LAP3 facilitates immune evasion through impaired CD8+ T cell infiltration and cytotoxicity in the GC tumor microenvironment (TME). Notably, our findings reveal that LAP3 enhances PD-L1 expression by binding to UBE3A, an E3 ubiquitin ligase. Ubenimex disrupts the LAP3-UBE3A interaction, leading to restored UBE3A-mediated ubiquitination and degradation of PD-L1. This mechanism reinvigorates CD8+ T cell infiltration and cytotoxic activity within the TME, thereby overcoming resistance to anti-PD-L1 therapy. In conclusion, our study provides a strong rationale for the synergistic potential of Ubenimex in combination with PD-1/PD-L1 blockade, offering a promising strategy to overcome current limitations of ICIs therapy in GC patients.

## Linked entities

- **Genes:** LAP3 (leucine aminopeptidase 3) [NCBI Gene 51056], UBE3A (ubiquitin protein ligase E3A) [NCBI Gene 7337], CD274 (CD274 molecule) [NCBI Gene 29126]
- **Proteins:** CD8A (CD8 subunit alpha), UBE3A (ubiquitin protein ligase E3A), CD274 (CD274 molecule), LAP3 (leucine aminopeptidase 3)
- **Diseases:** gastric cancer (MONDO:0001056)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** LAP3 (leucine aminopeptidase 3) [NCBI Gene 51056] {aka HEL-S-106, LAP, LAPEP, PEPS}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Fcr (Fc receptor) [NCBI Gene 109615], CBL (Cbl proto-oncogene) [NCBI Gene 867] {aka C-CBL, CBL2, FRA11B, NSLL, RNF55}, LAP3 (leucine aminopeptidase 3) [NCBI Gene 425306], LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, CBLL2 (Cbl proto-oncogene like 2) [NCBI Gene 158506] {aka CT138, HAKAIL, ZNF645}, Lap3 (leucine aminopeptidase 3) [NCBI Gene 66988] {aka 2410015L10Rik, LAP-3, Lap, Lapep, Pep-7, Pep-S}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, STUB1 (STIP1 homology and U-box containing protein 1) [NCBI Gene 10273] {aka CHIP, HSPABP2, NY-CO-7, SCA48, SCAR16, SDCCAG7}, HUWE1 (HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1) [NCBI Gene 10075] {aka ARF-BP1, HECTH9, HSPC272, Ib772, LASU1, MRXST}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, FBXO22 (F-box protein 22) [NCBI Gene 26263] {aka FBX22, FISTC1, TYMAS}, Tmprss11d (transmembrane protease, serine 11d) [NCBI Gene 231382] {aka AST, AsP}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Blnk (B cell linker) [NCBI Gene 17060] {aka BASH, Bca, Ly-57, Ly57, Lyw-57, SLP-65}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, Ube3a (ubiquitin protein ligase E3A) [NCBI Gene 22215] {aka 4732496B02, 5830462N02Rik, A130086L21Rik, Hpve6a}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, UBE3A (ubiquitin protein ligase E3A) [NCBI Gene 7337] {aka ANCR, AS, E6-AP, EPVE6AP, HPVE6A, PIX1}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, Ube3c (ubiquitin protein ligase E3C) [NCBI Gene 100763] {aka RAUL, mKIAA0010}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}
- **Diseases:** mycoplasma (MESH:D009175), Cytotoxicity (MESH:D064420), subcutaneous (MESH:D013352), acute non-lymphocytic leukemia (MESH:D054198), breast cancer (MESH:D001943), necrosis (MESH:D009336), dislocation (MESH:D004204), glioma (MESH:D005910), EBV (MESH:D020031), inflammation (MESH:D007249), esophageal squamous cell carcinoma (MESH:D000077277), Cancer (MESH:D009369), GC (MESH:D013274), squamous non-small-cell lung cancer (MESH:D002289), forestomach squamous cell carcinoma (MESH:D002294)
- **Chemicals:** penicillin (MESH:D010406), puromycin (MESH:D011691), G418 (MESH:C010680), CytoTox96 (-), pembrolizumab (MESH:C582435), polybrene (MESH:D006583), SYBR Green (MESH:C098022), CO2 (MESH:D002245), CQ (MESH:D002738), DMSO (MESH:D004121), DAPI (MESH:C007293), formalin (MESH:D005557), hydrogen (MESH:D006859), DAB (MESH:C000469), CHX (MESH:D003513), PVDF (MESH:C024865), PBS (MESH:D007854), NaCl (MESH:D012965), paraffin (MESH:D010232), Ubenimex (MESH:C012211), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), EDTA (MESH:D004492), lactate (MESH:D019344), NP-40 (MESH:C010615), isoflurane (MESH:D007530), MG132 (MESH:C072553), water (MESH:D014867), leucine (MESH:D007930), HCl (MESH:D006851), SDS (MESH:D012967), silver (MESH:D012834)
- **Species:** Homo sapiens (human, species) [taxon 9606], Helicobacter pylori (species) [taxon 210], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** F12K
- **Cell lines:** MFC — Mus musculus (Mouse), Mouse gastric carcinoma, Cancer cell line (CVCL_5J48), NCI-N87 — Homo sapiens (Human), Gastric tubular adenocarcinoma, Cancer cell line (CVCL_1603), CVCL1603 — Homo sapiens (Human), Finite cell line (CVCL_7324), oeLAP3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), HGC-27 — Homo sapiens (Human), Gastric carcinoma, Cancer cell line (CVCL_1279), CVCL_0139 — Homo sapiens (Human), Transformed cell line (CVCL_K408), CVCL5J48 — Mus musculus (Mouse), Hybridoma (CVCL_J728), GES-1 — Homo sapiens (Human), Transformed cell line (CVCL_EQ22), AGS — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0139)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12960727/full.md

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Source: https://tomesphere.com/paper/PMC12960727