# MERS-CoV and SARS-CoV-1 proteins inhibit the IFN-α JAK/STAT pathway of epithelial cells, via IFN-λ-induced USP18

**Authors:** Yamei Zhang, Nigel J. Stevenson

PMC · DOI: 10.3389/fimmu.2026.1739662 · 2026-02-19

## TL;DR

This study shows how MERS-CoV and SARS-CoV-1 proteins block the body's antiviral defenses by interfering with the IFN-α signaling pathway in epithelial cells.

## Contribution

The study identifies IFN-λ-induced USP18 as a novel mechanism by which MERS-CoV and SARS-CoV-1 inhibit the IFN-α JAK/STAT pathway.

## Key findings

- MERS-CoV-nsp2 and SARS-CoV-1-nsp14 upregulate IFN-λ1/3, leading to reduced IFN-α responsiveness.
- Both MERS-CoV-nsp2 and SARS-CoV-1-nsp14 induce USP18, a negative regulator of the IFN-α pathway.
- Silencing USP18 restores IFN-α signaling and ISG induction in infected cells.

## Abstract

The recent emergence of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV)-2 highlights the need for greater understanding of the immune evasion mechanisms used by Coronavirus (CoVs) to subvert antiviral responses. Previous global outbreaks caused by Middle East respiratory syndrome coronavirus (MERS-CoV) and SARS-CoV-1 were associated with high mortality rates and limited therapeutic options. Interferon (IFN)-α is the body’s natural antiviral agent; but its Janus kinase/signal transducer and activators of transcription (JAK/STAT) signalling pathway is often antagonized by viruses, thereby preventing the upregulation of essential, anti-viral IFN Stimulated Genes (ISGs). Notably, therapeutic IFN-α has disappointingly weak clinical responses in MERS-CoV and SARS-CoV-1 infected patients, indicating that these CoVs inhibit the IFN-α JAK/STAT pathway. We previously identified that MERS-CoV-non-structural protein(nsp)2 and nsp5 and SARS-CoV-1-nsp14 block the IFN-α JAK/STAT signalling pathway in human epithelial A549 cells; however, the mechanisms behind this inhibition remain unknown. In this study, we explored the factors influencing basal STAT1 and STAT2 phosphorylation and discovered that the expression of MERS-CoV-nsp2 and SARS-CoV-1-nsp14, but not MERS-CoV-nsp5, upregulated IFN-λ1/3 in A549 cells. Neutralization of IFN-λ1/3 revealed that this induction was responsible for the observed basal STAT1 and STAT2 phosphorylation, resulting in reduced responsiveness to exogenous IFN-α. Furthermore, both MERS-CoV-nsp2 and SARS-CoV-1-nsp14 induced the expression of USP18, a negative regulator of the IFN-α JAK/STAT pathway, resulting in reduced responsiveness to exogenous IFN-α. Silencing USP18 reinstated IFN-α-mediated STAT1 phosphorylation and ISG induction. Collectively, these findings shed light on the diverse strategies employed by these CoVs to evade type I IFN antiviral responses. While providing evidence for the ineffectiveness of exogenous IFN-α treatment during CoV infection, our discoveries also identify these viral proteins as potential targets for therapeutic intervention.

## Linked entities

- **Genes:** USP18 (ubiquitin specific peptidase 18) [NCBI Gene 11274], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772], STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773]
- **Proteins:** IFN1@ (interferon, type 1, cluster)

## Full-text entities

- **Genes:** IFNL3 (interferon lambda 3) [NCBI Gene 282617] {aka IFN-lambda-3, IFN-lambda-4, IL-28B, IL-28C, IL28B, IL28C}, IFNL1 (interferon lambda 1) [NCBI Gene 282618] {aka IL-29, IL29}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, IFNAR2 (interferon alpha and beta receptor subunit 2) [NCBI Gene 3455] {aka IFN-R, IFN-R-2, IFN-alpha-REC, IFNABR, IFNARB, IMD45}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021] {aka ATOD4, CIS3, Cish3, SOCS-3, SSI-3, SSI3}, MX1 (MX dynamin like GTPase 1) [NCBI Gene 4599] {aka IFI-78K, IFI78, MX, MxA, lncMX1-215}, IFNA2 (interferon alpha 2) [NCBI Gene 3440] {aka IFN-alpha-2, IFN-alphaA, IFNA, IFNA2B, leIF A}, JAK1 (Janus kinase 1) [NCBI Gene 3716] {aka AIIDE, JAK1A, JAK1B, JTK3}, USP18 (ubiquitin specific peptidase 18) [NCBI Gene 11274] {aka ISG43, PTORCH2, UBP43}, STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773] {aka IMD44, ISGF-3, P113, PTORCH3, STAT113}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IFNLR1 (interferon lambda receptor 1) [NCBI Gene 163702] {aka CRF2/12, IFNLR, IL-28R1, IL28RA, LICR2}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, TYK2 (tyrosine kinase 2) [NCBI Gene 7297] {aka IMD35, JTK1}, IL10RB (interleukin 10 receptor subunit beta) [NCBI Gene 3588] {aka CDW210B, CRF2-4, CRFB4, D21S58, D21S66, IBD25}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, IFNA4 (interferon alpha 4) [NCBI Gene 3441] {aka IFN-alpha4a, INFA4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, SPECC1 (sperm antigen with calponin homology and coiled-coil domains 1) [NCBI Gene 92521] {aka CYTSB, HCMOGT-1, HCMOGT1, NSP, NSP5}, SH2D3A (SH2 domain containing 3A) [NCBI Gene 10045] {aka NSP1}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, IFNL2 (interferon lambda 2) [NCBI Gene 282616] {aka IFNL2a, IFNL3a, IL-28A, IL28A}
- **Diseases:** SARS-CoV-1 infected (MESH:D000086382), infected (MESH:D007239), CoV infection (MESH:D018352), viral infections (MESH:D014777), HCV infection (MESH:D006526), DENV infection (MESH:D003715), lung carcinoma (MESH:D008175), HHV (MESH:D020031), inflammation (MESH:D007249)
- **Chemicals:** CO2 (MESH:D002245), phosphoric acid (MESH:C030242), Lipofectamine 2000 (MESH:C086724), Penicillin (MESH:D010406), DMEM (-), SDS (MESH:D012967), DTT (MESH:D004229), Streptomycin (MESH:D013307), TRITON-X (MESH:D017830), EDTA (MESH:D004492), NaCl (MESH:D012965), leupeptin (MESH:C032854), BFA (MESH:D020126)
- **Species:** Coronaviridae (family) [taxon 11118], Dengue virus (no rank) [taxon 12637], Homo sapiens (human, species) [taxon 9606], Respiratory syncytial virus (no rank) [taxon 12814], Severe acute respiratory syndrome-related coronavirus (no rank) [taxon 694009], Hepatitis B virus (no rank) [taxon 10407], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Gammacoronavirus (genus) [taxon 694013], Human papillomavirus (species) [taxon 10566], Mus musculus (house mouse, species) [taxon 10090], Hepatitis C virus [taxon 11103], Middle East respiratory syndrome-related coronavirus (no rank) [taxon 1335626]
- **Cell lines:** BEAS 2b — Homo sapiens (Human), Transformed cell line (CVCL_0168), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12960643/full.md

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Source: https://tomesphere.com/paper/PMC12960643