# Molecular evolution and adaptations of Legionella pneumophila from amoebae hosts to macrophages

**Authors:** Cheon Jee Shin, Yousef Abu Kwaik

PMC · DOI: 10.3389/fcimb.2026.1787137 · Frontiers in Cellular and Infection Microbiology · 2026-02-19

## TL;DR

This paper explores how Legionella pneumophila evolved from infecting amoebae to infecting human macrophages, leading to Legionnaires' Disease.

## Contribution

It provides a comprehensive review of how co-evolution with amoebae shaped L. pneumophila's genomic evolution and host range expansion.

## Key findings

- L. pneumophila manipulates host cells using secretion systems to evade predation and replicate intracellularly.
- The bacterium's adaptation to amoebae has facilitated its ability to infect human macrophages.
- Genomic plasticity and effector diversity reflect evolutionary pressures from diverse protozoan hosts.

## Abstract

Legionella pneumophila is an environmental bacterium that emerged from a prolonged co-evolution and adaptation to free-living amoebae as the natural hosts. Within these protozoan hosts, L. pneumophila evolved to evade amoebae predation and remodel their vacuoles into endoplasmic reticulum (ER)-derived vacuoles that evade phagosomal-lysosomal fusion. The L. pneumophila-amoebae co-evolution fortuitously has facilitated infection of human alveolar macrophages, resulting in pneumonia known as Legionnaires’ Disease. Intracellular replication and host manipulation are orchestrated by the Dot/Icm Type IV Secretion System (T4SS), which translocate more than 350 effectors that remodel host membrane trafficking, metabolism, and immune signaling, and by the Type II Secretion System, which releases ≈120 hydrolytic enzymes that promote nutrient acquisition and environmental persistence. The extraordinary diversity and redundancy of these effectors reflect evolutionary pressures within diverse protozoan reservoirs that have sculpted an arsenal capable of subverting numerous eukaryotic processes in diverse environmental hosts and is obvious from genomic plasticity. Adaptation of L. pneumophila to the intracellular life within unicellular phagocytic amoebae has played a major role in host expansion to human macrophages that share numerous conserved processes with amoebae, which are thought to be their ancestors. However, since Legionella modulate various mammalian-specific processes not present in unicellular amoebae, it is also likely that Legionella has also evolved through interaction with multi-cellular eukaryotic environmental hosts prior the infection of humans. It is also possible that many of the mammalian-specific processes modulated by effectors of Legionella can be an accidental host response to amoebae-adapted effectors rather than specific adaptation. This is a comprehensive review that synthesizes advances in our knowledge of ecology, epidemiology, metabolism, secretion systems, and host-pathogen interactions of L. pneumophila, highlighting how environmental selection and co-evolution with protozoan hosts drive genomic evolution and expansion of the host range from unicellular eukaryotic amoebae to humans.

## Linked entities

- **Diseases:** Legionnaires’ Disease (MONDO:0005824), pneumonia (MONDO:0005249)
- **Species:** Legionella pneumophila (taxon 446)

## Full-text entities

- **Genes:** icmO (type IVB secretion system protein IcmO/DotL) [NCBI Gene 57034448] {aka AVR58_02205, dotL}, legK4 (Dot/Icm T4SS effector kinase LegK4) [NCBI Gene 57034214] {aka AVR58_01035}, lubX (Dot/Icm T4SS effector E3 ubiquitin ligase LubX/LegU2) [NCBI Gene 57036828] {aka AVR58_14210, legU2}, LbtU [NCBI Gene 57035316], MavN [NCBI Gene 57036813], sidM (Dot/Icm T4SS effector guanine nucleotide-exchange factor DrrA/SidM) [NCBI Gene 57036458] {aka AVR58_12360, drrA}, RAB1A (RAB1A, member RAS oncogene family) [NCBI Gene 5861] {aka RAB1, YPT1}, RavD [NCBI Gene 57034170], LpnE [NCBI Gene 57036214], lvgA (Dot/Icm type IV secretion system effector LvgA) [NCBI Gene 57034526] {aka AVR58_02595}, lbtA (siderophore legiobactin biosynthesis protein LbtA) [NCBI Gene 57035315] {aka AVR58_06600}, sidK (Dot/Icm T4SS effector v-ATPase inhibitor SidK) [NCBI Gene 57034956] {aka AVR58_04770}, SdcA [NCBI Gene 57036507], PlaC [NCBI Gene 57036835], mavC (Dot/Icm T4SS effector MavC) [NCBI Gene 57036142] {aka AVR58_10740}, ravX (Dot/Icm T4SS effector RavX) [NCBI Gene 57035479] {aka AVR58_07420}, ravZ (Dot/Icm T4SS effector RavZ) [NCBI Gene 57035674] {aka AVR58_08395}, ceg3 (Dot/Icm T4SS effector Ceg3) [NCBI Gene 57034088] {aka AVR58_00410}, MesI [NCBI Gene 57036502], icmK (type IVB secretion system protein IcmK/DotH) [NCBI Gene 57034452] {aka AVR58_02225, dotH}
- **Diseases:** like illness (MESH:C537675), bacterial (MESH:D001424), loss of appetite (MESH:D001068), necrotic (MESH:D009336), CAP (MESH:D003147), legionellosis (MESH:D007876), mysterious (MESH:D019318), pericarditis (MESH:D010493), encephalopathy (MESH:D001927), deaths (MESH:D003643), infection (MESH:D007239), cough (MESH:D003371), cytotoxic (MESH:D064420), multi organ failure (MESH:D009102), diarrhea (MESH:D003967), Legionnaires' pneumonia (MESH:D011014), fatigue (MESH:D005221), fever (MESH:D005334), lung infection (MESH:D012141), respiratory shock (MESH:D012769), inflammation (MESH:D007249), headache (MESH:D006261), flu (MESH:D007251), respiratory illness (MESH:D012140), pulmonary disease (MESH:D008171), renal failure (MESH:D051437), L. pneumophila infections (MESH:D007877)
- **Chemicals:** PHB (MESH:C003182), ATP (MESH:D000255), LPS (MESH:D008070), ferric pyrophosphate (MESH:C049051), cysteine (MESH:D003545), lipids (MESH:D008055), cellulose (MESH:D002482), beta-lactams (MESH:D047090), sphingolipid (MESH:D013107), ppGpp (MESH:D006159), threonine (MESH:D013912), ROS (MESH:D017382), glucose (MESH:D005947), Myo-inositol (MESH:D007294), palmitate (MESH:D010168), GSDMD (-), tetracycline (MESH:D013752), penicillin (MESH:D010406), Glycerol (MESH:D005990), macrolides (MESH:D018942), heme (MESH:D006418), Amino acid (MESH:D000596), arginine (MESH:D001120), Saturated fatty acids (MESH:D005227), cyclic-di-GMP (MESH:C062025), rhizoferrin (MESH:C087496), fluoroquinolones (MESH:D024841), serine (MESH:D012694), chlorine (MESH:D002713), valine (MESH:D014633), leucine (MESH:D007930), phospholipid (MESH:D010743), water (MESH:D014867), Glycogen (MESH:D006003), Iron (MESH:D007501), acetyl-CoA. (MESH:D000105), branched-chain amino acids (MESH:D000597), mannose (MESH:D008358), pyruvate (MESH:D019289), GTP (MESH:D006160), methionine (MESH:D008715), O-antigen (MESH:D019081), sugars (MESH:D000073893), acid (MESH:D000143), PI (MESH:D010716), histidine (MESH:D006639), isoleucine (MESH:D007532), nitrogen (MESH:D009584), carbon (MESH:D002244), TCA (MESH:D014233), PPP (MESH:D010428), pyomelanin (MESH:C023793), chitin (MESH:D002686)
- **Species:** Erwinia amylovora (species) [taxon 552], Francisella (genus) [taxon 262], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Coxiella burnetii (species) [taxon 777], Legionella pneumophila (species) [taxon 446], Coxiella (genus) [taxon 1260513], Bartonella (genus) [taxon 773], Aquicella (genus) [taxon 254245], Chlamydia (genus) [taxon 810], Vermamoeba vermiformis (species) [taxon 5778], Agrobacterium (genus) [taxon 357], Legionella pneumophila serogroup 1 (serogroup) [taxon 66976], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Rhodococcus (genus) [taxon 1661425], Vibrio cholerae (species) [taxon 666], Homo sapiens (human, species) [taxon 9606], Pseudomonas syringae (species) [taxon 317], Acanthamoeba castellanii (species) [taxon 5755], Legionella longbeachae (species) [taxon 450], Mycobacteriales (order) [taxon 85007], Amoeba (genus) [taxon 5774], Rickettsiella grylli (species) [taxon 59196], Salmonella (genus) [taxon 590], Vibrio (genus) [taxon 662], Campylobacter (genus) [taxon 194], Mus musculus (house mouse, species) [taxon 10090], Pseudomonas aeruginosa (species) [taxon 287], Yersinia enterocolitica (species) [taxon 630], Rickettsiella (genus) [taxon 59195], Klebsiella pneumoniae (species) [taxon 573], Helicobacter (genus) [taxon 209]
- **Cell lines:** MM6 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_1426), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12960579/full.md

## References

410 references — full list in the complete paper: https://tomesphere.com/paper/PMC12960579/full.md

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Source: https://tomesphere.com/paper/PMC12960579