# Microbiota management: a perspective for kidney transplant patients

**Authors:** Cláudia Silva Souza, Niels Olsen Saraiva Camara, Thaís Alves-Silva

PMC · DOI: 10.3389/frtra.2026.1703048 · Frontiers in Transplantation · 2026-02-19

## TL;DR

This paper explores how managing gut microbiota through dietary fiber and supplements can improve kidney transplant outcomes and reduce complications.

## Contribution

The paper proposes a novel perspective on using gut-derived substances and microbiota management to enhance allograft tolerance in kidney transplant patients.

## Key findings

- Intestinal dysbiosis worsens kidney function and transplant outcomes due to increased uremic toxins.
- Prebiotics, probiotics, and synbiotics can reduce inflammation and improve renal function in CKD patients.
- Short-chain fatty acids like butyrate and acetate may promote allograft acceptance by inducing T regulatory cells.

## Abstract

Chronic kidney disease (CKD) is recognized as one of the most significant public health issues globally, with approximately 40% of patients progressing to end-stage kidney disease (ESKD). Transplantation remains the most indicated option for many patients with ESKD; however, these individuals frequently experience hospital readmissions and face a heightened risk of developing other complications. Although short-term allograft survival, typically around one year, tends to be satisfactory, long-term graft survival is often compromised due to acute and chronic rejection, which can be mediated by antibodies or other recipient-related factors. Recent studies and review articles have emphasized the relationship between intestinal dysbiosis and chronic renal failure, as well as the poor outcomes associated with kidney transplantation. The CKD itself, as well as the immunosuppressive medications used by organ transplant recipients, can lead to intestinal dysbiosis, which in turn increases the production of uremic toxins that can harm even the transplanted kidney. Clinical studies have demonstrated that the combination of prebiotics, probiotics, and synbiotics—supplements that aid in the establishment of intestinal microbiota—can effectively help control the production of nitrogenous substances, reduce renal inflammation, and alleviate gastrointestinal symptoms in patients with CKD. Experimental models have shown that short-chain fatty acids derived from gut fermentation of dietary fiber, such as butyrate and acetate, could improve renal function and reduce renal inflammation, allowing better acceptance of kidney allograft, partly by inducing T regulatory cells. Despite the growing evidence supporting the positive effects of maintaining a balanced microbiota, there is still a lack of comprehensive reviews in this field. Additionally, recent findings suggest that the type of fiber consumed may influence intestinal health and even increase susceptibility to colorectal cancer, depending on the fiber type. Therefore, we aim to explore how substances derived from gut fermentation of dietary fiber, in addition to probiotics, prebiotics, and synbiotics, contribute to allograft tolerance, with a particular focus on their potential application in establishing renal function in allograft recipients.

## Linked entities

- **Chemicals:** butyrate (PubChem CID 104775), acetate (PubChem CID 175)
- **Diseases:** chronic kidney disease (MONDO:0005300), end-stage kidney disease (MONDO:0004375), colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** HCAR2 (hydroxycarboxylic acid receptor 2) [NCBI Gene 338442] {aka GPR109A, HCA2, HM74a, HM74b, NIACR1, PUMAG}, FFAR3 (free fatty acid receptor 3) [NCBI Gene 2865] {aka FFA3R, GPR41}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, FFAR2 (free fatty acid receptor 2) [NCBI Gene 2867] {aka FFA2R, GPR43}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}
- **Diseases:** obese (MESH:D009765), hepatic steatosis (MESH:D005234), colorectal tumorigenesis (MESH:D063646), diarrhea (MESH:D003967), AKI (MESH:D058186), IgAN (MESH:D005922), ischemia (MESH:D007511), cardiometabolic diseases (MESH:D024821), fibrosis (MESH:D005355), sarcopenia (MESH:D055948), inflammation (MESH:D007249), muscular atrophy (MESH:D009133), gastrointestinal symptoms (MESH:D012817), injury (MESH:D014947), reflux (MESH:D005764), gastrointestinal pain (MESH:D010146), cancer (MESH:D009369), diabetes (MESH:D003920), ischemic (MESH:D002545), Dysbiosis (MESH:D064806), kidney failure (MESH:D051437), CKD (MESH:D051436), abdominal pain (MESH:D015746), inflammatory bowel disease (MESH:D015212), kidney allograft loss (MESH:D007674), bacterial infections (MESH:D001424), type 2 diabetes mellitus (MESH:D003924), MN (MESH:D015433), constipation (MESH:D003248), stage 5 (MESH:D062706), diabetic kidney disease (MESH:D003928), infectious complications (MESH:D003141), cognitive impairment (MESH:D003072), reperfusion injury (MESH:D015427), Clostridium difficile infection (MESH:D003015), GM (MESH:C536735), colorectal cancer (MESH:D015179), hypertension (MESH:D006973), colitis (MESH:D003092), gastrointestinal disorders (MESH:D005767), ESKD (MESH:D007676), infections (MESH:D007239), CVD (MESH:D002318), uremic (MESH:D006463), metabolic acidosis (MESH:D000138), insulin resistance (MESH:D007333)
- **Chemicals:** nicotinamide (MESH:D009536), inulin (MESH:D007444), mycophenolate mofetil (MESH:D009173), inosine (MESH:D007288), fat (MESH:D005223), sulfate (MESH:D013431), formate (MESH:C030544), fiber (MESH:D004043), sugar (MESH:D000073893), p-cresyl sulfate (MESH:C408690), lactic acid (MESH:D019344), triglyceride (MESH:D014280), Prebiotics (MESH:D056692), guar gum (MESH:C007894), P-cresol (MESH:C032538), lipid (MESH:D008055), LPS (MESH:D008070), indole-3-aldehyde (MESH:C012381), cellulose (MESH:D002482), acetate (MESH:D000085), sodium acetate (MESH:D019346), SCFA (MESH:D005232), bile acid (MESH:D001647), IAId (-), cyclosporine (MESH:D016572), indoxyl sulfate (MESH:D007200), tacrolimus (MESH:D016559), butyrate (MESH:D002087), hyodeoxycholic acid (MESH:C010471), dexamethasone (MESH:D003907), malondialdehyde (MESH:D008315), fatty acids (MESH:D005227), propionate (MESH:D011422)
- **Species:** Desulfovibrio (genus) [taxon 872], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Bacteroides ovatus (species) [taxon 28116], Lacticaseibacillus paracasei (species) [taxon 1597], Enterobacter (genus) [taxon 547], Enterococcus (genus) [taxon 1350], Bacteroides uniformis (species) [taxon 820], Lactobacillus acidophilus (species) [taxon 1579], Bifidobacterium animalis subsp. lactis (subspecies) [taxon 302911], Hungatella (genus) [taxon 1649459], Mus musculus (house mouse, species) [taxon 10090], Prevotella (genus) [taxon 838], Eubacterium (genus) [taxon 1730], Lacticaseibacillus rhamnosus (species) [taxon 47715], Levilactobacillus brevis (species) [taxon 1580], Bifidobacterium pseudolongum (species) [taxon 1694], Lacticaseibacillus casei str. Zhang (strain) [taxon 498216], Lactiplantibacillus plantarum (species) [taxon 1590], Bacteroidia (class) [taxon 200643], gut metagenome (species) [taxon 749906], Lacticaseibacillus casei (species) [taxon 1582], Lactobacillus johnsonii (species) [taxon 33959], Staphylococcus (genus) [taxon 1279], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Clostridioides difficile (species) [taxon 1496]

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## References

137 references — full list in the complete paper: https://tomesphere.com/paper/PMC12960561/full.md

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Source: https://tomesphere.com/paper/PMC12960561