# Development and validation of a potency assay matrix for optimized and consistent manufacture of clinical mesenchymal stem/stromal cells

**Authors:** Patrick Niekamp, Dongsheng Gu, Jie Jiang, Erik J. Woods, Brian H. Johnstone

PMC · DOI: 10.3389/fimmu.2026.1725191 · Frontiers in Immunology · 2026-02-19

## TL;DR

This paper presents a validated potency assay matrix for mesenchymal stem cells to ensure consistent quality and functionality for clinical use.

## Contribution

A novel potency assay matrix was developed to evaluate and ensure the therapeutic consistency of MSCs.

## Key findings

- MSCs consistently suppress T cell proliferation and induce regulatory T cell differentiation.
- MSCs polarize monocytes into anti-inflammatory M2 macrophages and secrete immunoregulatory molecules like M-CSF, TGFβ1, and CCL2.
- MSCs secrete extracellular vesicles that induce an anti-inflammatory phenotype in immune cells.

## Abstract

Mesenchymal stem/stromal cells (MSCs) are being evaluated as cell-based therapies for inflammatory and immune-mediated disorders. However, variability in clinical efficacy and a lack of validated potency assays have impeded regulatory approval for commercialization. Here, we report on our success with developing a matrix of potency assays for evaluating the therapeutic fitness of bone marrow-derived MSCs and demonstrate that the cells consistently suppress T cell proliferation, induce regulatory T cell differentiation, and polarize monocytes into anti-inflammatory M2 macrophages.

Vertebrae were recovered from consented and screened organ donors by Organ Procurement Organizations and shipped on ice to a central processing facility for isolation of vertebral body bone marrow. MSCs were cultured in a xenogeneic-free medium and characterized based on established markers and expanded for 4 passages. Modulation of immune cells isolated from peripheral blood was evaluated using T cell suppression assays, macrophage polarization, regulatory T cell (Treg) induction and monocyte/macrophage chemoattraction assays.

Mechanistic studies revealed that potency is mediated by MSC-secreted immunoregulatory molecules, including macrophage colony-stimulating factor (M-CSF), transforming growth factor-β1 (TGFβ1), and the chemokine CCL2, as well as by tryptophan depletion via the cytoplasmic protein indoleamine 3,4 dioxygenase-1 (IDO1). Additionally, we show that MSCs secrete high levels of extracellular vesicles which potently induce an anti-inflammatory phenotype in T cells and monocytes. These findings were employed to develop a matrix of surrogate potency assays which consistently demonstrated predicted in vitro functionality of MSCs derived from 10 donors.

This potency assay platform provides a critical tool for ensuring the quality and consistency of MSC products and will facilitate clinical translation by demonstrating comparability between MSC donors as well as manufactured lots and potentially predicting therapeutic efficacy in clinical trials.

## Linked entities

- **Proteins:** CSF1 (colony stimulating factor 1), TGFB1 (transforming growth factor beta 1), CCL2 (C-C motif chemokine ligand 2), IDO1 (indoleamine 2,3-dioxygenase 1)

## Full-text entities

- **Genes:** APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, GAS6 (growth arrest specific 6) [NCBI Gene 2621] {aka AXLLG, AXSF}, TSG101 (tumor susceptibility 101) [NCBI Gene 7251] {aka TSG10, VPS23}, VAV3 (vav guanine nucleotide exchange factor 3) [NCBI Gene 10451], CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, CD81 (CD81 molecule) [NCBI Gene 975] {aka CVID6, S5.7, TAPA1, TSPAN28}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, NT5E (5'-nucleotidase ecto) [NCBI Gene 4907] {aka CALJA, CD73, E5NT, NT, NT5, NTE}, HLA-DRA (major histocompatibility complex, class II, DR alpha) [NCBI Gene 3122] {aka HLA-DRA1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, CD9 (CD9 molecule) [NCBI Gene 928] {aka BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29}, TOMM20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 9804] {aka MAS20, MOM19, TOM20}, THY1 (Thy-1 cell surface antigen) [NCBI Gene 7070] {aka CD90, CDw90}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, CANX (calnexin) [NCBI Gene 821] {aka CNX, IP90, P90}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, CD14 (CD14 molecule) [NCBI Gene 929], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, THBS1 (thrombospondin 1) [NCBI Gene 7057] {aka THBS, THBS-1, TSP, TSP-1, TSP1}, HSP90B1 (heat shock protein 90 beta family member 1) [NCBI Gene 7184] {aka ECGP, GP96, GRP94, HEL-S-125m, HEL35, TRA1}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, HLA-DMB (major histocompatibility complex, class II, DM beta) [NCBI Gene 3109] {aka D6S221E, RING7}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, HLA-DMA (major histocompatibility complex, class II, DM alpha) [NCBI Gene 3108] {aka D6S222E, DMA, HLADM, RING6}, PDCD6IP (programmed cell death 6 interacting protein) [NCBI Gene 10015] {aka AIP1, ALIX, DRIP4, HP95, MCPH29}, MERTK (MER proto-oncogene, tyrosine kinase) [NCBI Gene 10461] {aka MER, RP38, Tyro12, c-Eyk, c-mer}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Ido1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 15930] {aka Ido, Indo}, HLA-DPB1 (major histocompatibility complex, class II, DP beta 1) [NCBI Gene 3115] {aka DPB1, HLA-DP, HLA-DP1B, HLA-DPB}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, Cd28 (CD28 antigen) [NCBI Gene 12487], CD93 (CD93 molecule) [NCBI Gene 22918] {aka C1QR1, C1qR(P), C1qRP, CDw93, ECSM3, MXRA4}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436] {aka BANDDOS, C-FMS, CD115, CSF-1R, CSFR, FIM2}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, LAP (Laryngeal adductor paralysis) [NCBI Gene 7939], IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}
- **Diseases:** cancer (MESH:D009369), Graft-versus-Host Disease (MESH:D006086), inflammatory (MESH:D007249), immune-mediated disorders (MESH:C567355), T (MESH:D001260), PN (MESH:C565820)
- **Chemicals:** EDTA (MESH:D004492), FITC (MESH:D016650), Kyn (MESH:D007737), SDS (MESH:D012967), HCl (MESH:D006851), Laemmli buffer (MESH:C088816), Glycine (MESH:D005998), NaOH (MESH:D012972), A83-01 (MESH:C507011), 2-mercaptoethanol (MESH:D008623), Me2SO (-), 1-Methyl-L-tryptophan (MESH:C000629814), PVDF (MESH:C024865), Trp (MESH:D014364), PBS (MESH:D007854), TBS-T (MESH:C027647), poly-A (MESH:D011061), DAPI (MESH:C007293), DMSO (MESH:D004121), steroid (MESH:D013256), SB431542 (MESH:C459179)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12960169/full.md

## References

76 references — full list in the complete paper: https://tomesphere.com/paper/PMC12960169/full.md

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Source: https://tomesphere.com/paper/PMC12960169