# Fecal short-chain fatty acids and serum metabolites: the impact of COVID-19 infection on dialysis patients

**Authors:** Jiamin Duan, Jing Zhang, Changlin Li, Yuting Li, Duo Yu, Yuwei Chen, Qingli Yang, Xiaomeng Lin, Xudong Cai

PMC · DOI: 10.3389/fnut.2026.1772671 · Frontiers in Nutrition · 2026-02-19

## TL;DR

This study finds that dialysis patients with COVID-19 have reduced fecal short-chain fatty acids and altered serum metabolites, which may contribute to long-term complications.

## Contribution

The study identifies specific metabolic changes in dialysis patients with COVID-19 and links them to long-term outcomes.

## Key findings

- Infected dialysis patients had lower fecal short-chain fatty acids like propionate and butyrate.
- Serum metabolites related to amino acid and energy metabolism were altered in infected patients.
- Persistent amino-acid-centered metabolic changes were observed in patients who developed long COVID.

## Abstract

Patients undergoing dialysis are particularly susceptible to severe COVID-19 outcomes owing to pre-existing metabolic and immunological dysregulation, which may exacerbate clinical severity and elevate the risk of long COVID (LC). Nevertheless, the precise metabolic pathways implicated remain poorly characterized. This study aimed to characterize fecal short-chain fatty acids (SCFAs) and serum metabolomic signatures in dialysis patients with acute COVID-19 and to explore their association with LC.

Targeted liquid chromatography–tandem mass spectrometry (LC–MS/MS) quantified fecal SCFAs in 27 infected patients and 28 non-infected controls, and untargeted gas chromatography–mass spectrometry (GC–MS)-based metabolomics profiled serum samples from 23 infected patients and all 40 controls in partially overlapping patient subsets, with repeat serum sampling at 3 months and stratification into LC and non-LC groups. Multivariate analyses, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, and Pearson correlation analyses between differential metabolites and routine clinical indicators were performed.

Infected patients exhibited significantly lower fecal levels of six SCFAs, including propionate and butyrate, compared with controls. Serum metabolomics identified 54 infection-related differential metabolites enriched in amino acid, energy, carbohydrate, and nucleotide metabolism, and 77 LC-associated metabolites predominantly mapping to amino acid and energy pathways. Pearson correlation analysis showed that amino acids and energy-supporting metabolites (e.g., glutamine, aspartate, methionine, cystine, taurine) were inversely correlated with C-reactive protein, leukocyte and neutrophil counts, and aspartate aminotransferase, but positively correlated with albumin, serum potassium, and lymphocyte or eosinophil counts, whereas purine degradation products and organic acids (e.g., uric acid, hypoxanthine, pyruvate, glycolate) exhibited the opposite pattern.

COVID-19 infection in dialysis patients is associated with marked depletion of fecal SCFAs and broad perturbations of systemic metabolism, with persistent amino-acid-centered alterations among patients who develop LC. These findings offer a novel metabolic framework supporting the implementation of prolonged follow-up strategies to monitor and ameliorate persistent sequelae in this high-risk population.

## Linked entities

- **Chemicals:** propionate (PubChem CID 104745), butyrate (PubChem CID 104775), glutamine (PubChem CID 738), aspartate (PubChem CID 5960), methionine (PubChem CID 876), cystine (PubChem CID 67678), taurine (PubChem CID 1123), uric acid (PubChem CID 1175), hypoxanthine (PubChem CID 135398638), pyruvate (PubChem CID 107735), glycolate (PubChem CID 757)
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Diseases:** cough (MESH:D003371), urinary tract infection (MESH:D014552), loss of taste/smell (MESH:D000086582), insulin resistance (MESH:D007333), uraemic (MESH:D006463), protein (MESH:D011488), Infected (MESH:D007239), T (MESH:D001260), deficiency of tyrosine (MESH:C537537), COVID-19 (MESH:D000086382), immune dysfunction (MESH:D007154), ESRD (MESH:D007676), hyperammonemia (MESH:D022124), deaths (MESH:D003643), metabolic malnutrition (MESH:D044342), post-viral syndrome (MESH:D014777), CL (MESH:D002971), anemia (MESH:D000740), Symptom (MESH:D012816), rheumatoid arthritis (MESH:D001172), endotoxemia (MESH:D019446), cognitive decline (MESH:D003072), brain fog (MESH:D005222), LC (MESH:D000094024), memory impairment (MESH:D008569), immune dysregulation (OMIM:614878), diabetic nephropathy (MESH:D003928), systemic (MESH:D015619), muscle/joint pain (MESH:D063806), palpitations (MESH:D006331), congestive heart failure (MESH:D006333), depression (MESH:D003866), Kidney Disease (MESH:D007674), CKD (MESH:D051436), memory decline (MESH:D060825), psychiatric conditions (MESH:D001523), dyspnea (MESH:D004417), gut dysbiosis (MESH:D064806), muscle weakness (MESH:D018908), malignancy (MESH:D009369), sleep disturbance (MESH:D012893), injury (MESH:D014947), headache (MESH:D006261), inflammation (MESH:D007249), uremia (MESH:D014511), hepatic insufficiency (MESH:D048550), hypertensive nephropathy (MESH:C563161), systemic lupus erythematosus (MESH:D008180), hypoxia (MESH:D000860), impaired nutritional status (MESH:D009748), metabolic deficits (MESH:D009461), chronic obstructive pulmonary disease (MESH:D029424), fatigue (MESH:D005221), immune paralysis (MESH:D010243), chest pain (MESH:D002637), wasting (MESH:D019282), depletion (MESH:C536350), acute kidney injury (MESH:D058186), bacterial pneumonia (MESH:D018410), autoimmune diseases (MESH:D001327)
- **Chemicals:** Phenylalanine (MESH:D010649), serine (MESH:D012694), propionate (MESH:D011422), Arginine (MESH:D001120), carbohydrate (MESH:D002241), butyrate (MESH:D002087), aspartate (MESH:D001224), urea (MESH:D014508), Amino acids (MESH:D000596), sugar alcohols (MESH:D013402), potassium (MESH:D011188), cystine (MESH:D003553), BSTFA (MESH:C047270), indoxyl sulfate (MESH:D007200), BCFAs (-), sulfur (MESH:D013455), valeric acid (MESH:C038780), Helium (MESH:D006371), creatinine (MESH:D003404), sodium propionate (MESH:C514135), threonine (MESH:D013912), SCFA (MESH:D005232), dopamine (MESH:D004298), tryptophan (MESH:D014364), LPS (MESH:D008070), lipid (MESH:D008055), Cysteine (MESH:D003545), Purine (MESH:C030985), taurine (MESH:D013654), glutathione (MESH:D005978), glutamine (MESH:D005973), butyric acid (MESH:D020148), acetonitrile (MESH:C032159), Alanine (MESH:D000409), isobutyric acid (MESH:C020380), uric acid (MESH:D014527), p-cresyl sulfate (MESH:C408690), Histidine (MESH:D006639), Nitrogen (MESH:D009584), L-isoleucine (MESH:D007532), formic acid (MESH:C030544), 2-methylbutyric acid (MESH:C019475), hypoxanthine (MESH:D019271), methionine (MESH:D008715), pyruvate (MESH:D019289), 3-NPH (MESH:C523491), methoxyamine (MESH:C005214), methanol (MESH:D000432), proline (MESH:D011392), glycolate (MESH:C031149), isovaleric acid (MESH:C008216), Glyoxylate (MESH:C031150), Glycine (MESH:D005998), norepinephrine (MESH:D009638), GABA (MESH:D005680), BCAA (MESH:D000597), N-methyl-D-aspartate (MESH:D016202), essential amino acid (MESH:D000601), kynurenine (MESH:D007737), acetic acid (MESH:D019342)
- **Species:** Homo sapiens (human, species) [taxon 9606], gut metagenome (species) [taxon 749906], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]
- **Mutations:** tyrosine/phenylalanine

## Full text

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## Figures

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## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12960162/full.md

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Source: https://tomesphere.com/paper/PMC12960162