# AI‐derived prognostic biomarkers from melanoma whole slide image segmentation: an initial discovery and assessment

**Authors:** Emily L Clarke, Derek Magee, Julia Newton‐Bishop, Gerald Saldanha, William Merchant, Marlous Hall, Robert Insall, Nigel G Maher, Richard A Scolyer, Grace Farnworth, Anisah Ali, Mark Bamford, Eva Sticova, Petr Kujal, Sally O'Shea, Darren Treanor

PMC · DOI: 10.1002/2056-4538.70075 · The Journal of Pathology: Clinical Research · 2026-03-04

## TL;DR

This study uses AI to analyze melanoma images and finds new biomarkers that predict patient survival better than current methods.

## Contribution

The study introduces new objective histomorphological parameters derived from AI segmentation for melanoma prognosis.

## Key findings

- Five parameters from AI segmentation significantly predict overall and melanoma-specific survival.
- Digital Breslow thickness and Nodularity Index are novel biomarkers with strong prognostic value.
- AI-based segmentation offers objectivity and automation for current and new melanoma biomarkers.

## Abstract

The current melanoma staging system predicts 74% of the variance in survival, with prognostic biomarkers subject to high levels of inter‐observer variation. This work assesses whether a previously developed convolutional neural network (CNN) for invasive melanoma segmentation in whole slide images (WSIs) may reveal new insights into melanoma morphology and patient prognosis. This paper uses Cox proportional multivariate regression analyses to evaluate the ability of the CNN outputs to predict patient survival across 745 WSIs from 5 data sources. Five objective histomorphological parameters of tumour size and shape that are independently associated with overall and melanoma‐specific survival were created from the CNN: tumour area(log) (HR 1.48 CI 1.30–1.68, p < 0.001), tumour perimeter(log) (HR 1.86 CI 1.48–2.32, p < 0.001), major axis length(log) (HR 1.88 CI 1.42–2.48, p < 0.001), Nodularity Index(log) (HR 1.77 CI 1.28–2.43, p < 0.001) and digital Breslow thickness(log) (HR 2.04, CI 1.63–2.54, p < 0.001). These results indicate that melanoma segmentation of the entire lesion within a WSI may be used to predict patient outcome. Moreover, this technology can be used to make new morphological discoveries to provide information not currently contained within our staging system (e.g. Nodularity Index), as well as provide objectivity and automation of current biomarkers (e.g. digital Breslow thickness). Further work is required to validate this initial discovery and evaluation.

## Linked entities

- **Diseases:** melanoma (MONDO:0005105)

## Full-text entities

- **Genes:** BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}
- **Diseases:** invasive (MESH:D009361), died (MESH:D003643), NM (MESH:C536816), lentigo maligna melanomas (MESH:D018327), NI (MESH:D008224), ulcerate (MESH:D014456), Melanoma (MESH:D008545), PK (MESH:C564858), pigmented and non-pigmented tumours (MESH:D010859), Tumour (MESH:D009369)
- **Chemicals:** NI (-), Vitamin D (MESH:D014807)
- **Species:** Homo sapiens (human, species) [taxon 9606], Enterovirus C (no rank) [taxon 138950]
- **Mutations:** V600, AUC of 0

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12959248/full.md

## References

18 references — full list in the complete paper: https://tomesphere.com/paper/PMC12959248/full.md

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Source: https://tomesphere.com/paper/PMC12959248