# Simple, fast, reliable: multiplex digital PCR quantification of 19 genetically modified soybean events

**Authors:** Amadej Jelenčič, Dejan Štebih, Tina Demšar, David Dobnik

PMC · DOI: 10.1080/21645698.2026.2635816 · GM Crops & Food · 2026-02-27

## TL;DR

This paper introduces a fast and reliable method to detect and measure 19 genetically modified soybean varieties using a digital PCR technique.

## Contribution

The study presents the most comprehensive multiplex dPCR method for GM soybean quantification without prior screening.

## Key findings

- The method uses four 5-plex assays to quantify 19 GM soybean events and an endogene on a nanowell plate-based system.
- The assays meet performance requirements for specificity, trueness, precision, sensitivity, and dynamic range.
- The approach simplifies workflow and is suitable for routine regulatory monitoring of GM crops.

## Abstract

Plant genetic engineering represents an important aspect of modern agriculture, and new genetically modified (GM) crop varieties are entering the market on a regular basis. This necessitates the development of high throughput multi-target analytical methods to detect and quantify their presence for regulatory compliance. In this study, we present a multiplex dPCR method for discriminative quantification of 19 GM soybean events and the lectin (Le1) endogene on a nanowell plate-based all-in-one dPCR system. The method consists of four 5-plex assays, taking advantage of the platform’s multiple fluorescence detection channels. The assays complied with the minimum performance requirements in terms of specificity, trueness, precision, sensitivity and dynamic range, making them suitable for use in routine detection and quantification of GM crops. This method represents the most comprehensive multi-target GM soybean quantification approach to date without the need for prior screening and features a simplified workflow, making it suitable for widespread adoption. Our study sets a precedent for rapid and straightforward development of multiplex dPCR GM crop quantification assays to address the evolving demands of regulatory monitoring.

## Full-text entities

- **Genes:** LE1 (lectin) [NCBI Gene 100818710] {aka Agglutinin, SBA}, LOC282340 (ribonuclease, RNase A family, 1 (pancreatic)) [NCBI Gene 282340] {aka RAC2, RNASE1, RNS1}
- **Diseases:** GM (OMIM:605429), GMOs (MESH:D000092124)
- **Chemicals:** water (MESH:D014867), DAS (MESH:C025953), oil (MESH:D009821), CTAB (MESH:D000077286), A5547 (-)
- **Species:** Carica papaya (mamon, species) [taxon 3649], Brassica napus var. napus (annual rape, varietas) [taxon 138011], Glycine max (soybean, species) [taxon 3847], Beta vulgaris subsp. vulgaris (field beet, subspecies) [taxon 3555], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Solanum tuberosum (potatoes, species) [taxon 4113], Zea mays (maize, species) [taxon 4577], Brassica napus (oilseed rape, species) [taxon 3708]
- **Cell lines:** A2704-12 — Homo sapiens (Human), Finite cell line (CVCL_M928), MON-94313-8 — Homo sapiens (Human), Extrarenal rhabdoid tumor, Cancer cell line (CVCL_M846)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12959185/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12959185/full.md

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Source: https://tomesphere.com/paper/PMC12959185