# Unraveling the dynamic changes in the intestinal microbiome: impacts on pre-weaning calf health and productivity

**Authors:** Yang Song, Shubo Wen, Le Luo Guan

PMC · DOI: 10.1186/s40104-026-01354-6 · Journal of Animal Science and Biotechnology · 2026-03-04

## TL;DR

This review explores how early gut microbes in calves affect their health and productivity, and how factors like diet and interventions can shape these microbes.

## Contribution

The paper provides a comprehensive review of factors influencing early-life gut microbiota in calves and their implications for health and productivity.

## Key findings

- Early gut microbiota influences calf health, growth, and productivity through nutrient metabolism and immune development.
- Microbial interventions like probiotics and FMT can shape early-life microbial colonization.
- Microbial dysbiosis in calves can have long-term negative effects on beef and dairy cattle production.

## Abstract

The early life gut microbial colonization in pre-weaning calves plays a pivotal role in shaping their health, growth, and productivity. This review delves into the dynamic changes of intestinal microbiota during early life, emphasizing key factors such as colostrum management, feeding strategies, roughage supplementation, and microbial interventions including probiotics, prebiotics, and fecal microbiota transplantation (FMT), and non-nutritional stressors that can shape the early life microbial colonization. We highlight the microbiota's critical functions in nutrient metabolism, immune development, gut barrier integrity, and gut-brain axis regulation. Additionally, the consequences of microbial dysbiosis on calf health and its long-term effects on production performance in beef and dairy cattle are discussed. While current research has provided valuable insights, understanding causal mechanisms remains a challenge. This review aims to guide practical strategies for targeted microbial management, offering a pathway to optimize early-life interventions for improved calf health and productivity.

## Full-text entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 280943] {aka TNF-a, TNF-alpha, TNFa}, HSPA1A (heat shock protein family A (Hsp70) member 1A) [NCBI Gene 282254] {aka HSP70, HSP70-1, HSP70-2, HSPA1, HSPA1B, HSPA2}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, IL2 (interleukin 2) [NCBI Gene 280822] {aka IL-2, TCGF}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 281333] {aka mucin}, HTR2B (5-hydroxytryptamine receptor 2B) [NCBI Gene 407135] {aka 5-HT2B, 5HT2B, 5htr2b}, NTF3 (neurotrophin 3) [NCBI Gene 4908] {aka HDNF, NGF-2, NGF2, NT-3, NT3}, CLDN1 (claudin 1) [NCBI Gene 414922], HTR4 (5-hydroxytryptamine receptor 4) [NCBI Gene 317708], IFNG (interferon gamma) [NCBI Gene 281237], TJP1 (tight junction protein 1) [NCBI Gene 407102] {aka zo1}, OCLN (occludin) [NCBI Gene 512405]
- **Diseases:** MOS (MESH:C535741), fever (MESH:D005334), HS (MESH:D018882), mood disorders (MESH:D019964), BRD (MESH:D048090), microbial (MESH:D015163), Fetal gastrointestinal sterility (MESH:D005315), pneumonia (MESH:D011014), Diarrhea (MESH:D003967), Microbial dysbiosis (MESH:D064806), inflammation (MESH:D007249), respiratory disease (MESH:D012140), infections (MESH:D007239), gastrointestinal sterility (MESH:D007246), immune defects (MESH:D007154), gastrointestinal disorders (MESH:D005767), weight (MESH:D015431), diarrheal (MESH:D004403)
- **Chemicals:** malic acid (MESH:C030298), water (MESH:D014867), LA (MESH:D007811), glycerol-3-phosphate (MESH:C029620), luminal (MESH:D010634), ceftiofur (MESH:C053503), lactate (MESH:D019344), cortisol (MESH:D006854), fumaric acid (MESH:C032005), Fructooligosaccharide (MESH:C116580), streptomycin (MESH:D013307), pyruvate (MESH:D019289), fiber (MESH:D004043), ammonia (MESH:D000641), acetate (MESH:D000085), dihydroxyacetone phosphate (MESH:D004099), Anemoside B4 (MESH:C000620474), Trehalose (MESH:D014199), chlortetracycline (MESH:D002751), SCFA (MESH:D005232), glutamine (MESH:D005973), Prebiotics (MESH:D056692), LPS (MESH:D008070), mineral (MESH:D008903), butyrate (MESH:D002087), amino acid (MESH:D000596), propionate (MESH:D011422), triterpenoid (MESH:D014315), starch (MESH:D013213), TFA (MESH:D014269), TCA (MESH:D014238), fatty acids (MESH:D005227), carbohydrate (MESH:D002241), CRD-7 (-), NO (MESH:D009614), oligosaccharides (MESH:D009844), penicillin (MESH:D010406), tetracycline (MESH:D013752)
- **Species:** Leuconostoc (genus) [taxon 1243], Histophilus somni (species) [taxon 731], Lactobacillus acidophilus (species) [taxon 1579], Ruminococcus (genus) [taxon 1263], Citrobacter (genus) [taxon 544], Zingiber officinale (ginger, species) [taxon 94328], Psychrobacter (genus) [taxon 497], Moraxella (genus) [taxon 475], Mycoplasma (genus) [taxon 2093], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Ovis aries (domestic sheep, species) [taxon 9940], Sphingomonas (genus) [taxon 13687], Butyrivibrio (genus) [taxon 830], Methanobacteriales (order) [taxon 2158], Eubacterium (genus) [taxon 1730], Prevotella (genus) [taxon 838], Mus musculus (house mouse, species) [taxon 10090], Coprococcus (genus) [taxon 33042], Saccharomyces boulardii [taxon 252598], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Cryptosporidium (genus) [taxon 5806], Clostridium perfringens (species) [taxon 1502], Gallibacterium (genus) [taxon 155493], Bacillus subtilis (species) [taxon 1423], Salmonella (genus) [taxon 590], Campylobacter (genus) [taxon 194], Escherichia coli (E. coli, species) [taxon 562], Phocaeicola vulgatus (species) [taxon 821], Fibrobacter succinogenes (species) [taxon 833], Limosilactobacillus reuteri (species) [taxon 1598], Lactiplantibacillus plantarum (species) [taxon 1590], Blautia (genus) [taxon 572511], Faecalimonas nexilis (species) [taxon 29361], Bovine coronavirus (no rank) [taxon 11128], Bacteroidia (class) [taxon 200643], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Butyricicoccus (genus) [taxon 580596], Bos taurus (bovine, species) [taxon 9913], Succiniclasticum (genus) [taxon 40840], Pseudomonas (RNA similarity group I, genus) [taxon 286], Akkermansia (genus) [taxon 239934], Bacteroides fragilis (species) [taxon 817], Fusobacterium (genus) [taxon 848], Lactobacillus johnsonii (species) [taxon 33959], Lactococcus (lactic streptococci, genus) [taxon 1357], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Olsenella (genus) [taxon 133925], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853], Bifidobacterium (genus) [taxon 1678], Burkholderia (genus) [taxon 32008], Chlamydia (genus) [taxon 810], Lachnospira (genus) [taxon 28050], Fusobacteriia (class) [taxon 203490], Streptococcus (genus) [taxon 1301]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12958607/full.md

## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12958607/full.md

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Source: https://tomesphere.com/paper/PMC12958607