# Prognostic Significance of HMGA1 in Hepatocellular Carcinoma: Implications for Tumor Progression and Targeted Therapy

**Authors:** Tianhao Tong, Bin Cheng, Wenhui Gao, Renyi Yang, Huiying Jian, Jingting Zhang, Zhuo Liu, Puhua Zeng

PMC · DOI: 10.34172/aim.34456 · Archives of Iranian Medicine · 2025-10-01

## TL;DR

This study shows that HMGA1 is overexpressed in liver cancer and is linked to worse survival, suggesting it could be a target for treatment.

## Contribution

The study identifies HMGA1 as an independent prognostic biomarker and functional driver in hepatocellular carcinoma.

## Key findings

- HMGA1 overexpression correlates with advanced cancer stage, metastasis, and poor survival outcomes in LIHC.
- HMGA1 knockdown reduces cancer cell proliferation, migration, and colony formation while inducing senescence.
- HMGA1 is associated with immune evasion and senescence bypass in hepatocellular carcinoma.

## Abstract

High mobility group A1 (HMGA1) has emerged as a key oncogenic factor in various cancers, but its specific role in liver hepatocellular carcinoma (LIHC) remains incompletely understood. This study aimed to investigate the expression pattern, biological functions, immune associations, clinical relevance, and therapeutic potential of HMGA1 in LIHC.

We conducted a multi-omics analysis integrating transcriptomic, proteomic, and clinical data from TCGA, CPTAC, and HPA databases. Functional enrichment, immune infiltration profiling, and survival analyses were performed. In-vitro assays, including CCK-8, colony formation, β-galactosidase staining, and wound healing, were used to validate HMGA1’s biological functions in LIHC cells.

HMGA1 was significantly overexpressed in LIHC at both mRNA and protein levels (P<0.001). High HMGA1 expression correlated with advanced pathological stage, metastasis, and elevated AFP levels (all P<0.001). Kaplan-Meier analysis revealed that elevated HMGA1 predicted poor overall survival (OS) (HR=1.83, 95% CI: 1.12–2.99, P=0.014), disease-specific survival (DSS) (HR=2.12, 95% CI: 1.33–3.35, P=0.002), and progression-free interval (PFI) (HR=1.68, 95% CI: 1.14–2.48, P=0.009). Multivariate Cox analysis confirmed HMGA1 as an independent prognostic factor for OS (HR=1.75, 95% CI: 1.11–2.76, P=0.016). A nomogram incorporating HMGA1 and clinicopathological variables showed good predictive performance with a 3-year AUC of 0.723. Functionally, HMGA1 knockdown suppressed LIHC cell proliferation (38.9% reduction in HepG2 and 46.0% in Huh-7 at 48h), migration (44–59% inhibition at 24h), and colony formation (41.8–44.2% reduction), while significantly inducing cellular senescence (3.4–3.5-fold increase in β-gal+cells, P<0.001). GSEA and immune analysis indicated that HMGA1 may promote immune evasion and senescence bypass.

HMGA1 serves as a robust prognostic biomarker and functional driver of malignant progression in LIHC. Its integration into prognostic models may enhance risk stratification and guide personalized therapeutic strategies. Nevertheless, further in-vivo validation and prospective clinical studies are required to establish its translational applicability.

## Linked entities

- **Genes:** HMGA1 (high mobility group AT-hook 1) [NCBI Gene 3159]
- **Diseases:** hepatocellular carcinoma (MONDO:0007256)

## Full-text entities

- **Genes:** IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, IRF1 (interferon regulatory factor 1) [NCBI Gene 3659] {aka IMD117, IRF-1, MAR}, CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, CCNB2 (cyclin B2) [NCBI Gene 9133] {aka HsT17299}, FDPS (farnesyl diphosphate synthase) [NCBI Gene 2224] {aka FPPS, FPS, POROK9}, GGPS1 (geranylgeranyl diphosphate synthase 1) [NCBI Gene 9453] {aka GGPPS, GGPPS1, MDHLO, MUDHLOV}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, HMGA1 (high mobility group AT-hook 1) [NCBI Gene 442946] {aka HMGA1A, HMGIY}, PRDM9 (PR/SET domain 9) [NCBI Gene 56979] {aka KMT8B, MEISETZ, MSBP3, PFM6, ZNF899}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MCM4 (minichromosome maintenance complex component 4) [NCBI Gene 4173] {aka CDC21, CDC54, IMD54, NKCD, NKGCD, P1-CDC21}, AURKB (aurora kinase B) [NCBI Gene 9212] {aka AIK2, AIM-1, AIM1, ARK-2, ARK2, AurB}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, AFP (alpha fetoprotein) [NCBI Gene 174] {aka AFPD, FETA, HPAFP}, GINS2 (GINS complex subunit 2) [NCBI Gene 51659] {aka HSPC037, PSF2, Pfs2}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, CCR2 (C-C motif chemokine receptor 2) [NCBI Gene 729230] {aka CC-CKR-2, CCR-2, CCR2A, CCR2B, CD192, CKR2}, GLB1 (galactosidase beta 1) [NCBI Gene 2720] {aka EBP, ELNR1, MPS4B}, HMGCR (3-hydroxy-3-methylglutaryl-CoA reductase) [NCBI Gene 3156] {aka LDLCQ3, LGMDR28, MYPLG}, E2F2 (E2F transcription factor 2) [NCBI Gene 1870] {aka E2F-2}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, HMGA1 (high mobility group AT-hook 1) [NCBI Gene 3159] {aka HMG-R, HMGA1A, HMGIY}
- **Diseases:** tumorigenesis (MESH:D063646), inflammation (MESH:D007249), NK dysfunction (MESH:D054066), Cancer (MESH:D009369), retinoblastoma (MESH:D012175), breast, pancreatic, and colorectal cancers (MESH:D001943), HCC aggressiveness (MESH:D006528), death (MESH:D003643), tumorigenic (MESH:D002471), metastasis (MESH:D009362)
- **Chemicals:** CCK-8 (MESH:D012844), cholesterol (MESH:D002784), kynurenine (MESH:D007737), P/S (MESH:D010758), mevalonate (MESH:D008798), streptomycin (MESH:D013307), EDTA (MESH:D004492), paraformaldehyde (MESH:C003043), lipid (MESH:D008055), CO2 (MESH:D002245), PBS (MESH:D007854), lysine (MESH:D008239), penicillin (MESH:D010406), Ca2+ (-), crystal violet (MESH:D005840)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), CL-0103 — Homo sapiens (Human), Transformed cell line (CVCL_K373), CL-0120 — Homo sapiens (Human), Transformed cell line (CVCL_K389), LIHC — Homo sapiens (Human), Hepatocellular carcinoma, Cancer cell line (CVCL_A1AS), HMGA1-1547 — Homo sapiens (Human), Bloom syndrome, Transformed cell line (CVCL_WX79), Huh-7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12958422/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12958422/full.md

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Source: https://tomesphere.com/paper/PMC12958422