# Potential Therapeutic Targets for Neuroblastoma Screened through Mendelian Randomization Analysis

**Authors:** Zhenge Yang, Yunlong Zhang, Shan Wang

PMC · DOI: 10.34172/aim.35114 · Archives of Iranian Medicine · 2025-11-01

## TL;DR

This study identifies adrenal and blood-related genes linked to neuroblastoma risk, suggesting new therapeutic targets involving immune cells.

## Contribution

Novel therapeutic targets for neuroblastoma are identified using Mendelian randomization and colocalization analysis.

## Key findings

- Eight adrenal genes were found to have a causal relationship with neuroblastoma risk.
- Blood-related genes influence neuroblastoma through effects on 54 immune cell phenotypes.
- Eight genes and seven immune cells showed colocalization, indicating potential therapeutic relevance.

## Abstract

Neuroblastoma (NB) is the most prevalent extracranial solid tumor in children. Therefore, urgent exploration of novel therapeutic targets and more effective approaches is imperative to enhance the prognosis of these children.

NB datasets were obtained from OpenGWAS—ieu-a-816 (1,627 cases; 3,254 controls; European ancestry) and prot-a-2003 (N=3,301; European ancestry)—and were combined by inverse-variance meta-analysis. Adrenal expression quantitative trait loci (eQTL) data were sourced from GTEx v8 (n=233). Bidirectional Mendelian randomization (MR) and summary-based MR analyses were conducted to infer the causal relationship between adrenal-related genes and NB, with validation by Steiger directionality testing and phenotype scanning. Blood cis-eQTL datasets were obtained from eQTLGen (n=31,684 across 37 cohorts), and immune-cell data were retrieved from OpenGWAS (731 traits; IDs ebi-a-GCST90001391–GCST90002121). Using immune-cell traits as intermediate variables, bidirectional MR assessed the causal relationship between blood-related genes and NB, and colocalization analysis was performed for blood-related genes and immune cells.

Using two-sample bidirectional MR, we identified eight adrenal genes associated with NB risk. Upregulated expression of CPNE1 (OR 0.94, 95% CI [0.93–0.95]; P=1.69×10-31), ZNF559 (OR 0.93, 95% CI [0.92–0.95]; P=5.96×10-11), TTC18 (OR 0.86, 95% CI [0.85–0.87]; P=1.04×10-110), DNAJC9 (OR 0.85, 95% CI [0.84–0.86]; P=1.62×10-109), and EP400NL (OR 0.84, 95% CI [0.83–0.84]; P<1×10-300) was associated with lower NB risk, whereas upregulation of BTNL2 (OR 1.07, 95% CI [1.07–1.07]; P<1×10-300), FAM182B (OR 1.07, 95% CI [1.06–1.08]; P=3.94×10-23), and NBPF3 (OR 1.13, 95% CI [1.12–1.13]; P=6.49×10-5) was associated with higher risk. In the blood, 43 genes influence NB by affecting the expression of 54 immune cell phenotypes. Among these genes and immune cells, eight exhibited colocalization effects with seven immune cells, indicating their potential as therapeutic targets.

This study revealed that certain genes in the adrenal glands and blood affect the occurrence of NB, with immune cells playing a crucial role in the process influenced by blood genes. MR and colocalization prioritize candidate genes/putative therapeutic targets for NB.

## Linked entities

- **Genes:** CPNE1 (copine 1) [NCBI Gene 8904], ZNF559 (zinc finger protein 559) [NCBI Gene 84527], CFAP70 (cilia and flagella associated protein 70) [NCBI Gene 118491], DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9) [NCBI Gene 23234], EP400P1 (EP400 pseudogene 1) [NCBI Gene 347918], BTNL2 (butyrophilin like 2) [NCBI Gene 56244], FAM182B (family with sequence similarity 182 member B) [NCBI Gene 728882], NBPF3 (NBPF member 3) [NCBI Gene 84224]
- **Diseases:** Neuroblastoma (MONDO:0005072)

## Full-text entities

- **Genes:** STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, FAM114A2 (family with sequence similarity 114 member A2) [NCBI Gene 10827] {aka 133K02, C5orf3}, ENTPD1 (ectonucleoside triphosphate diphosphohydrolase 1) [NCBI Gene 953] {aka ATP-DPH, ATPDase, CD39, NTPDase-1, SPG64}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, SEMA3C (semaphorin 3C) [NCBI Gene 10512] {aka SEMAE, SemE}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, IGHV3-43 (immunoglobulin heavy variable 3-43) [NCBI Gene 28426] {aka IGHV343, VH}, RAN (RAN, member RAS oncogene family) [NCBI Gene 5901] {aka ARA24, Gsp1, TC4}, EP400P1 (EP400 pseudogene 1) [NCBI Gene 347918] {aka EP400NL}, CPNE1 (copine 1) [NCBI Gene 8904] {aka COPN1, CPN1}, NBPF3 (NBPF member 3) [NCBI Gene 84224] {aka AE2}, BAIAP2L2 (BAR/IMD domain containing adaptor protein 2 like 2) [NCBI Gene 80115], KCNK3 (potassium two pore domain channel subfamily K member 3) [NCBI Gene 3777] {aka DDSA, K2p3.1, OAT1, PPH4, TASK, TASK-1}, RANBP17 (RAN binding protein 17) [NCBI Gene 64901], RPP30 (ribonuclease P/MRP subunit p30) [NCBI Gene 10556] {aka TSG15}, DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9) [NCBI Gene 23234] {aka HDJC9, JDD1, SB73}, BTNL2 (butyrophilin like 2) [NCBI Gene 56244] {aka BTL-II, BTN7, HSBLMHC1, SS2}, IGHV3-49 (immunoglobulin heavy variable 3-49) [NCBI Gene 28423] {aka IGHV349, VH}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, LYPD4 (LY6/PLAUR domain containing 4) [NCBI Gene 147719] {aka SMR}, ZNF559 (zinc finger protein 559) [NCBI Gene 84527] {aka NBLA00121}, CLEC4D (C-type lectin domain family 4 member D) [NCBI Gene 338339] {aka CD368, CLEC-6, CLEC6, CLECSF8, Dectin-3, MCL}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CFAP161 (cilia and flagella associated protein 161) [NCBI Gene 161502] {aka C15orf26}, Btnl2 (butyrophilin-like 2) [NCBI Gene 547431] {aka BTL-II, BTLN2, Btl2, Gm315, NG9}, MIR34A (microRNA 34a) [NCBI Gene 777855] {aka MIRN34A, gga-mir-34a, mir-34a}, SEMA3C (semaphorin 3C) [NCBI Gene 374090] {aka semaphorin-3C}, FAM182B (family with sequence similarity 182 member B) [NCBI Gene 728882], CFAP70 (cilia and flagella associated protein 70) [NCBI Gene 118491] {aka SPGF41, TTC18}, PLSCR1 (phospholipid scramblase 1) [NCBI Gene 5359] {aka MMTRA1B}
- **Diseases:** melanoma (MESH:D008545), Tumors (MESH:D009369), lung cancer (MESH:D008175), Chronic Non-Communicable Diseases (MESH:D000073296), NB (MESH:D009447), hematologic malignancies (MESH:D019337), colon tumors (MESH:D003110), head and neck squamous cell carcinoma (MESH:D000077195), metastasis (MESH:D009362), colorectal cancer (MESH:D015179), YBXM-2019-003 (MESH:D000086382), Crohn's disease (MESH:D003424), MR (MESH:C562757), lung and breast cancers (MESH:D001943), multiple sclerosis (MESH:D009103)
- **Chemicals:** cisplatin (MESH:D002945), PPH0 (-), retinoic acid (MESH:D014212)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12958419/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12958419/full.md

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Source: https://tomesphere.com/paper/PMC12958419