# Calabanones A‒H, chromanone derivatives from the stem bark of Calophyllum calaba and their cytotoxic activities against cancer cells

**Authors:** Sutin Kaennakam, Fadjar Mulya, Manussada Ratanasak, Kitiya Rassamee, Pongpun Siripong, Yasuteru Shigeta, Preecha Phuwapraisirisan, Edwin R. Sukandar

PMC · DOI: 10.1007/s13659-026-00603-5 · Natural Products and Bioprospecting · 2026-03-04

## TL;DR

Researchers discovered eight new chromanone compounds from a tropical plant and found some to be moderately effective against cancer cells.

## Contribution

The discovery of eight new chromanone derivatives and the first report of chromanone–steroid hybrids in plants.

## Key findings

- Compounds 7 and 8 are the first chromanone–steroid hybrids reported in plants.
- Compounds 6 and 9 showed moderate cytotoxic activity against KB and HeLa S3 cancer cells.
- Compounds 3–5 selectively inhibited KB cell growth with IC50 values between 18.77 and 27.06 μM.

## Abstract

The genus Calophyllum (Calophyllaceae), distributed mainly in tropical regions, is rich in chromanone derivatives with diverse molecular structures that exhibit potential antimicrobial and anticancer effects. Phytochemical investigation of the stem bark of C. calaba collected in Thailand led to the discovery of eight previously undescribed chromanones, calabanones A–H (1‒8), and two known analogs, (‒)-isocalomembranone P (9) and (‒)-calomembranone P (10). The chemical structures of undescribed compounds were elucidated using spectroscopic analyses, particularly NMR and HRESIMS, while their absolute configurations were determined through ECD and NMR calculations combined with DP4+ probability analysis. Compounds 7 and 8 were identified as chromanone–steroid hybrids linked via an ester bond, representing the first report of such structures in plants. Cytotoxic evaluation of the isolated specialized metabolites revealed that compounds 6 and 9 displayed moderate activity against KB and HeLa S3 cancer cell lines, with IC50 values ranging from 12.71 to 25.50 μM, while compounds 3‒5 selectively inhibited the growth of KB cells, with IC50 values in the range of 18.77‒27.06 μM.

The online version contains supplementary material available at 10.1007/s13659-026-00603-5.

## Linked entities

- **Diseases:** cancer (MONDO:0004992)
- **Species:** Calophyllum calaba (taxon 883767)

## Full-text entities

- **Genes:** C4A (complement C4A (Chido/Rodgers blood group)) [NCBI Gene 720] {aka C4, C4A2, C4A3, C4A4, C4A6, C4AD}
- **Diseases:** Cytotoxicity (MESH:D064420), hepatocellular carcinoma (MESH:D006528), cervical carcinoma (MESH:D002583), cancer (MESH:D009369), epidermoid carcinoma (MESH:D002294)
- **Chemicals:** prenyl (MESH:C016077), silica (MESH:D012822), Sephadex LH-20 (MESH:C025614), hexanes (MESH:D006586), Doxorubicin (MESH:D004317), Na (MESH:D012964), pyranocoumarins (MESH:D039681), 2H (MESH:D003903), 3a (-), H-9 (MESH:C044388), triterpenoid (MESH:D014315), acetone (MESH:D000096), fatty acid (MESH:D005227), MTT (MESH:C070243), CHCl3 (MESH:D002725), steroid (MESH:D013256), DMSO (MESH:D004121), pyran (MESH:D011714), caloteysmannic acid (MESH:C000603256), H2SO4 (MESH:C033158), short-chain fatty acids (MESH:D005232), coumarins (MESH:D003374), H (MESH:D006859), isovaleryl-CoA (MESH:C017447), alcohols (MESH:D000438), acid (MESH:D000143), n-hexane (MESH:C026385), apetalic acid (MESH:C570384), biflavonoids (MESH:D044946), silica gel (MESH:D058428), (+)-inophyllum B (MESH:C086091), H-3 (MESH:C012616), 3H (MESH:D014316), methanol (MESH:D000432), Ester (MESH:D004952), C (MESH:D002244), carboxylic acid (MESH:D002264), CH2Cl2 (MESH:D008752), beta-sitosterol (MESH:C025473), (+)-calanolide A (MESH:C075959), coumarin (MESH:C030123), C-6 (MESH:C117224), cinnamic acid (MESH:C029010), malonyl-CoA (MESH:D008316), p-anisaldehyde (MESH:C024896), benzene (MESH:D001554), xanthones (MESH:D044004), ethanol (MESH:D000431), 13C (MESH:C000615229), H-16 (MESH:C022870), gypsum (MESH:D002133), acetic acid (MESH:D019342), isoprene (MESH:C005059)
- **Species:** Homo sapiens (human, species) [taxon 9606], Calophyllum inophyllum (species) [taxon 158927], Calophyllum calaba (species) [taxon 883767], Leptospermum scoparium (species) [taxon 295139], Petrachloros mirabilis (species) [taxon 2918835], Xanthostemon chrysanthus (black penda, species) [taxon 178187], Actaea cimicifuga (species) [taxon 64032], Calophyllum (genus) [taxon 73121], Human immunodeficiency virus 1 (no rank) [taxon 11676]
- **Cell lines:** KB — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0372), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), HeLa S3 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0058), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957744/full.md

## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957744/full.md

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Source: https://tomesphere.com/paper/PMC12957744