# A critical review on the roles of natural products in shaping oral microbiota and preventing chronic diseases

**Authors:** Yogesh Kumar, Baojun Xu

PMC · DOI: 10.1007/s13659-026-00605-3 · Natural Products and Bioprospecting · 2026-03-04

## TL;DR

This review explores how natural products can shape the oral microbiome and prevent chronic diseases by balancing microbial communities.

## Contribution

The paper provides a critical synthesis of recent evidence on natural products' effects on oral microbiota and their potential for disease prevention.

## Key findings

- Phytochemicals like polyphenols and terpenoids influence oral bacteria through antimicrobial and anti-inflammatory effects.
- Natural compounds support beneficial microbes while inhibiting pathogens, promoting a balanced oral microbiome.
- Challenges remain in translating these findings into safe and effective clinical applications.

## Abstract

The oral microbiome plays a central role in maintaining both oral and systemic health, and disruptions in its balance can contribute to a wide range of diseases. This review brings together current evidence on how natural products modulate oral microbial communities, promote microbial equilibrium, and help prevent conditions such as dental caries, periodontitis, and chronic systemic disorders linked to oral dysbiosis. Recent studies highlight that phytochemicals particularly polyphenols, terpenoids, saponins, and alkaloids exert antimicrobial, anti-inflammatory, and antioxidant effects that influence bacterial adhesion, biofilm development, gene expression, and acid production. These compounds not only inhibit key oral pathogens but also support beneficial species, helping to sustain a stable and resilient microbiome. Evidence was gathered from PubMed, Scopus, ScienceDirect, and Google Scholar using relevant keywords and focusing on literature from 2015 to 2025. Insights into microbial diversity, environmental influences, host genetics, and advanced sequencing tools further strengthen understanding of oral microbial dynamics. While natural products show strong potential, challenges related to safety, bioavailability, regulatory clarity, and clinical translation remain to explore. This review outlines current progress and future directions needed to transform natural compounds into effective, evidence-based strategies for improving oral and systemic health through microbiome modulation.

## Linked entities

- **Chemicals:** saponins (PubChem CID 6540709)
- **Diseases:** dental caries (MONDO:0005276), periodontitis (MONDO:0005076)

## Full-text entities

- **Genes:** IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}
- **Diseases:** pain (MESH:D010146), thromboembolic events (MESH:D013923), enamel (MESH:D003744), oral and systemic (MESH:D009056), hypertension (MESH:D006973), malnutrition (MESH:D044342), carcinogenic (MESH:D011230), candidiasis (MESH:D002177), bleeding gums (MESH:C537732), stroke (MESH:D020521), colorectal cancer (MESH:D015179), tooth eruption (MESH:D014079), Parkinson's disease (MESH:D010300), systemic (MESH:D015619), dementia (MESH:D003704), amyloid (MESH:C000718787), CHD (MESH:D003327), pregnancy complications (MESH:D011248), atherosclerosis (MESH:D050197), fetal loss (MESH:D005315), Carcinogenesis (MESH:D063646), oral (MESH:D020820), heart disease (MESH:D006331), oral cancer (MESH:D009062), pancreatic cancer (MESH:D010190), T2DM (MESH:D003924), Caries (MESH:D003731), neuronal damage (MESH:D009410), Neurodegenerative disease (MESH:D019636), lichen planus (MESH:D008010), stillbirth (MESH:D050497), xerostomia (MESH:D014987), Inflammatory conditions (MESH:D007249), Periodontitis (MESH:D010518), enamel demineralization (MESH:D017001), fibrosis (MESH:D005355), rheumatoid arthritis (MESH:D001172), platelet aggregation (MESH:D001791), autoimmune conditions (MESH:D001327), mucosal lesions (MESH:D009059), inflammatory bowel disease (MESH:D015212), Hyperglycemia (MESH:D006943), metabolic disturbances (MESH:D024821), aspiration pneumonia (MESH:D011015), cGVHD (MESH:D000092122), mucositis (MESH:D052016), Obesity (MESH:D009765), depression (MESH:D003866), celiac disease (MESH:D002446), Bacterial overgrowth (MESH:D001765), OSCC (MESH:D000077195), vascular damage (MESH:D057772), pre-eclampsia (MESH:D011225), cognitive decline (MESH:D003072), Pregnancy disorders (MESH:D011254), gingivitis (MESH:D005891), lung nodules (MESH:D003074), alveolar bone loss (MESH:D016301), systemic lupus erythematosus (MESH:D008180), toxicity (MESH:D064420)
- **Chemicals:** LPS (MESH:D008070), sugars (MESH:D000073893), 3,4-dimethylbenzoic acid (MESH:C102831), Cinnamaldehyde (MESH:C012843), acid (MESH:D000143), beta-caryophyllene (MESH:C024714), Gymnemic acids (MESH:C007898), Sanguinarine (MESH:C005705), Totarol (MESH:C078548), Essential oils (MESH:D009822), catechin (MESH:D002392), oxygen (MESH:D010100), Terpenoids (MESH:D013729), theasaponin E1 (MESH:C117120), sesquiterpene (MESH:D012717), Ginsenosides (MESH:D036145), L-( +)-leucine (MESH:D007930), ASA (-), EGCG (MESH:C045651), quinones (MESH:D011809), Polyphenols (MESH:D059808), water (MESH:D014867), sesamolin (MESH:C054124), carotenoids (MESH:D002338), sesamin (MESH:C054125), theasaponin E2 (MESH:C117121), Kaempferol (MESH:C006552), NO (MESH:D009614), sesame oil (MESH:D012715), eucalyptol (MESH:D000077591), xylitol (MESH:D014993), methicillin (MESH:D008712), tannins (MESH:D013634), lipid A (MESH:D008050), nitric oxide (MESH:D009569), Phloretin (MESH:D010693), flavonoid (MESH:D005419), stilbene (MESH:D013267), Eugenol (MESH:D005054), diterpene (MESH:D004224), Piceatannol (MESH:C041525), glucan (MESH:D005936), baicalin (MESH:C038044), menthol (MESH:D008610), cadaverine (MESH:D002103), N-acetyldopamine (MESH:C006374), reactive oxygen species (MESH:D017382), Saponins (MESH:D012503), carbohydrates (MESH:D002241), monoterpenoids (MESH:D039821), glycosides (MESH:D006027), Berberine (MESH:D001599), dihydrochalcone (MESH:C015812), thymol (MESH:D013943), butyrate (MESH:D002087), polysaccharide (MESH:D011134), ECG (MESH:C062669), coumarins (MESH:D003374), Alkaloids (MESH:D000470), PACs (MESH:D044945)
- **Species:** Leptothrix (genus) [taxon 1907117], Diospyros pallens (species) [taxon 268841], Escherichia coli (E. coli, species) [taxon 562], Treponema (genus) [taxon 157], Campylobacter (genus) [taxon 194], Piper nigrum (species) [taxon 13216], Streptococcus gordonii (species) [taxon 1302], Fusobacterium nucleatum (species) [taxon 851], Treponema denticola (species) [taxon 158], Ficus benghalensis (banyan, species) [taxon 309271], Pseudomonas (RNA similarity group I, genus) [taxon 286], Porphyromonas gingivalis (species) [taxon 837], Actinomyces (genus) [taxon 1654], Capnocytophaga (genus) [taxon 1016], Curcuma longa (turmeric, species) [taxon 136217], Prevotella intermedia (species) [taxon 28131], Aggregatibacter actinomycetemcomitans (species) [taxon 714], Achyranthes aspera (species) [taxon 240005], Faecalibacterium (genus) [taxon 216851], Emblica officinalis (amla, species) [taxon 296036], Streptococcus mutans (species) [taxon 1309], Aloe vera (acibar, species) [taxon 34199], Salvadora persica (species) [taxon 4326], Psidium guajava (guava, species) [taxon 120290], Shigella (genus) [taxon 620], Streptococcus sobrinus (species) [taxon 1310], Cutibacterium acnes (species) [taxon 1747], Camellia sinensis (black tea, species) [taxon 4442], Candida albicans (species) [taxon 5476], Veillonella parvula (species) [taxon 29466], Enterococcus faecalis (species) [taxon 1351], Fusobacterium necrophorum (species) [taxon 859], Prevotella melaninogenica (species) [taxon 28132], Cinnamomum tamala (species) [taxon 397098], Azadirachta indica (Indian-lilac, species) [taxon 124943], Megasphaera (genus) [taxon 906], Scutellaria baicalensis (Baikal skullcap, species) [taxon 65409], Gymnema sylvestre (species) [taxon 4068], Bifidobacterium (genus) [taxon 1678], Mimusops elengi (species) [taxon 233715], Panax ginseng (Asiatic ginseng, species) [taxon 4054], Podocarpus (genus) [taxon 3363], Lactobacillus (genus) [taxon 1578], Mentha spicata (spearmint, species) [taxon 29719], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Parvimonas (genus) [taxon 543311], Allium sativum (garlic, species) [taxon 4682], Punica granatum (granado, species) [taxon 22663], Chlamydia pneumoniae (species) [taxon 83558], Syzygium aromaticum (clove, species) [taxon 219868], Tannerella forsythia (species) [taxon 28112], Vachellia nilotica (babul, species) [taxon 138033], Cinnamomum verum (Ceylon cinnamon, species) [taxon 128608], Streptococcus salivarius (species) [taxon 1304], Selenomonas (genus) [taxon 970], Matricaria chamomilla var. recutita (German chamomile, varietas) [taxon 127986], Diospyros mespiliformis (species) [taxon 413760], Ocimum tenuiflorum (holy basil, species) [taxon 204149], Sanguinaria canadensis (bloodroot, species) [taxon 3472]

## Full text

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## Figures

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## References

5 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957685/full.md

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Source: https://tomesphere.com/paper/PMC12957685