# An integrated approach to unravel the deep-shallow aquifer connectivity in the Eastern Sahara

**Authors:** Ibrahim A. Ibrahim, Abotalib Z. Abotalib, Haby S. Mohamed, Mahmoud M. Senosy

PMC · DOI: 10.1038/s41598-026-38324-x · Scientific Reports · 2026-03-02

## TL;DR

This study explores how deep and shallow aquifers connect in southern Egypt to support agricultural projects in the desert.

## Contribution

The study integrates isotope data, remote sensing, and geophysics to analyze aquifer connectivity across a large region.

## Key findings

- The depth to the basement surface ranges from 350 to 4700 meters below the land surface.
- The contribution of deep NAS to overlying aquifers ranges between 10 and 98%.
- Fault intersections facilitate vertical groundwater upwelling in the western desert fringes of the Nile.

## Abstract

The ambitious agricultural development projects in Egypt and the associated horizontal expansion into the core desert lands and desert fringe zones around the Nile Valley primarily depend on water availability. This study investigates the vertical recharge from the deep Nubian Aquifer System (NAS) toward the shallow aquifers, including the Carbonate and Quaternary aquifers in southern Egypt. While this connectivity has been studied locally through case studies, the present study integrates stable isotope data from all previous studies, together with analyses from vastly distributed new groundwater samples, remote sensing, and geophysical methods to better understand groundwater dynamics and aquifer connectivity over a regional domain. Findings show that: (1) the depths to the basement surface range from 350 to 4700 m below the land surface, (2) the major structural trends are E-W, NW–SE, NE-SW, ENE, NNW, and WNW trends, (3) the contribution ratios from the deep NAS to the overlying aquifers range between 10 and 98% as estimated using isotope mass balance calculations, and (4) the intersection of NW, ENE, and NE structural trends, which show similar trends between surface faults and deep faults, indicating vertical continuity, plays a major role in aquifer connectivity along the western desert fringes of the Nile River, particularly south of latitude 26°30′N. These findings indicate that the relatively thin sedimentary cover overlying the NAS south of latitude 26°30′N facilitates the upwelling of the NAS groundwater along with the intersection of the NW, ENE, and NE fault systems. Given the consensus of high hydraulic heads of the NAS compared to the overlying aquifers, the study suggests that a large-scale vertical upwelling at the deduced intersecting structural trends throughout the entire Limestone Plateau is worthy of further investigation. Such vertical upwelling could bring significant groundwater resources to shallow levels, as long as the NAS maintains its higher heads, and thus supports desert greening projects in Egypt. The findings also highlight the necessity of examining similar mechanisms in other desert environments with multiple aquifer systems.

## Full-text entities

- **Diseases:** NAS (MESH:D015619), drought (MESH:C536747), TD (MESH:D007222), magnetic anomaly (MESH:D000013), RTP (MESH:D001523), water (MESH:D000069578)
- **Chemicals:** hydrogen (MESH:D006859), 16O (-), 2H (MESH:D003903), Hydrocarbon (MESH:D006838), deltaD (MESH:D002762), water (MESH:D014867), polyethylene (MESH:D020959), oxygen (MESH:D010100), limestone (MESH:D002119), Tritium (MESH:D014316), carbonate (MESH:D002254)

## Full text

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## Figures

20 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957504/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957504/full.md

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Source: https://tomesphere.com/paper/PMC12957504