# Staphylococcus epidermidis DnaK alters biofilm formation and proteome in Staphylococcus aureus CIP 107093

**Authors:** Clara Kayser, Karen Druart, Eleonore Bouscasse, Mariette Matondo, Andréa Chane, François Hoh, Anne Groboillot, Corinne Barbey, Annabelle Merieau, Xavier Latour, Pierre Soule, Estelle Mühle, Vic Norris, Yoan Konto-Ghiorghi

PMC · DOI: 10.3389/fmicb.2025.1705130 · Frontiers in Microbiology · 2026-02-18

## TL;DR

This study shows how a protein from Staphylococcus epidermidis affects biofilm formation in Staphylococcus aureus and other strains.

## Contribution

The study reveals the strain-dependent effects of S. epidermidis DnaK on biofilm formation and proteome changes in S. aureus.

## Key findings

- DnaK increases biofilm biomass in commensal strains but reduces it in clinical S. aureus CIP 107093.
- SBD mutations abolish biofilm reduction in CIP 107093, while NBD mutations have a milder effect.
- DnaK alters the S. aureus proteome by stabilizing degradation components and downregulating biofilm regulators.

## Abstract

Staphylococcus aureus and Staphylococcus epidermidis, two Gram-positive bacteria of the human skin microbiota, form biofilms that contribute to dysbiosis and inflammatory skin diseases such as psoriasis and atopic dermatitis. The human calcitonin gene-related peptide (CGRP), involved in skin inflammation, was previously shown to enhance the virulence of S. epidermidis MFP04. We previously observed a significant increase in the level of the molecular chaperone DnaK/Hsp70 in the secretome of CGRP-activated S. epidermidis. Here, we investigated the role of recombinant S. epidermidis DnaK in biofilm formation in both S. aureus and S. epidermidis. DnaK modulates biofilm formation in a strain-dependent manner. In commensal strains (S. aureus MFP03 and S. epidermidis MFP04), it is associated with an increase in biofilm biomass. In contrast, it significantly reduces biofilm formation in the clinical S. aureus strain CIP 107093. Point mutations in the substrate-binding domain (SBD) and nucleotide-binding domain (NBD) of DnaK differentially affect its modulation of biofilm formation. Specifically, only the mutation in the SBD abolishes the biofilm reduction observed in CIP 107093, while the NBD mutation results in a milder effect. Notably, these mutations have no significant impact on DnaK-induced biofilm changes in strains where DnaK promotes biofilm formation. Proteomic analyses of S. aureus CIP 107093 reveal that DnaK alters the S. aureus biofilm proteome, stabilizing protein degradation components and downregulating key biofilm regulators. These findings highlight the cross-species regulatory potential of S. epidermidis extracellular DnaK in the skin microbiota.

## Linked entities

- **Proteins:** dnaK (heat shock protein 70), CALCA (calcitonin related polypeptide alpha)
- **Diseases:** psoriasis (MONDO:0005083), atopic dermatitis (MONDO:0004980)
- **Species:** Staphylococcus aureus (taxon 1280), Staphylococcus epidermidis (taxon 1282), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** alpha-hemolysin [NCBI Gene 28381283], ATPase [NCBI Gene 28380186], clumping factor B [NCBI Gene 28379725], alkaline phosphatase [NCBI Gene 28379728], ETB [NCBI Gene 17374496]
- **Diseases:** cytotoxicity (MESH:D064420), CIP 107093 (MESH:C565467), infections (MESH:D007239), infectious diseases (MESH:D003141), CIP 107093 (MESH:D002292), AD (MESH:D003876), SSSS (MESH:D013206), dysbiosis (MESH:D064806), inflammatory skin diseases (MESH:D012871), inflammation (MESH:D007249), pulmonary infection (MESH:D012141), psoriasis (MESH:D011565), staphylococcal (MESH:D011023)
- **Chemicals:** oil (MESH:D009821), acetone (MESH:D000096), TCA (MESH:D014238), DDAO (MESH:C014518), CFW (MESH:C007061), PNAG (MESH:C113831), disulfide (MESH:D004220), SYTO9 (MESH:C103389), Crystal violet (MESH:D005840), CIP 107093 (-), FA (MESH:D005492), glucose (MESH:D005947), Tween-20 (MESH:D011136), agarose (MESH:D012685), cysteine (MESH:D003545), polystyrene (MESH:D011137), IPTG (MESH:D007544), ATP (MESH:D000255), TEAB (MESH:C041737), carbon (MESH:D002244), agar (MESH:D000362), acetonitrile (MESH:C032159), polysaccharide (MESH:D011134), TCEP (MESH:C080938), NaCl (MESH:D012965), methionine (MESH:D008715), MgCl2 (MESH:D015636), HCl (MESH:D006851), SDS (MESH:D012967), ACN (MESH:C084683), acetic acid (MESH:D019342), TSA (MESH:C481298), iodoacetamide (MESH:D007460), iron (MESH:D007501), Nucleotide (MESH:D009711), peptide (MESH:D010455), imidazole (MESH:C029899), water (MESH:D014867)
- **Species:** Escherichia coli K-12 (strain) [taxon 83333], Homo sapiens (human, species) [taxon 9606], Staphylococcus epidermidis (species) [taxon 1282], Mycobacterium tuberculosis (species) [taxon 1773], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Francisella tularensis (species) [taxon 263], Crohivirus B (no rank) [taxon 2169854], Mesomycoplasma hyorhinis (species) [taxon 2100], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** S427P, S397, S427, T210C, TCT with CCT at nucleotide position 1, S397P, T199, M13R, T199A, ACA with GCA at nucleotide position 517, M13F, T173, T173A, C into 2
- **Cell lines:** HaCat — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0038), E. coli BL21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639), lambdaDE3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), MFP03 — Homo sapiens (Human), Hybrid cell line (CVCL_9V34), E. coli BL21 lambdaDE3 — Mus musculus (Mouse), Hybridoma (CVCL_C5CP), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957280/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957280/full.md

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Source: https://tomesphere.com/paper/PMC12957280