# Epidemiological analysis of respiratory pathogen detection in 11 regions of Yunnan from 2021 to 2023

**Authors:** Wenlu Wang, Mei Liu, Xiaolin Zhu, Xianyao Yang, Yang Liu, Yaowu Chen

PMC · DOI: 10.3389/fpubh.2026.1771339 · Frontiers in Public Health · 2026-02-18

## TL;DR

This study analyzed respiratory infections in Yunnan, China, finding that young children and summer are key factors in infection spread.

## Contribution

The study provides new epidemiological insights into ARI pathogens in Yunnan, highlighting age, season, and regional patterns.

## Key findings

- Preschool children had the highest pathogen detection rate at 60.59%.
- Summer was the peak detection period with 31.56% of cases.
- Streptococcus pneumoniae and Haemophilus influenzae were the most common pathogens.

## Abstract

Acute respiratory infections (ARI), caused by various pathogens, are a significant global public health issue, and their epidemiological characteristics across different populations and regions still require indepth research. Based on laboratory surveillance data, this study analyzed the detection and distribution characteristics of ARI pathogens in 11 areas of Yunnan Province from 2021 to 2023.

A total of 7,906 ARI patient samples from 11 regions in Yunnan Province were included, and pathogen detection was performed using targeted next-generation sequencing (TNGS) technology covering viral, bacterial, and fungal respiratory pathogens. Stratified analysis was conducted by age group, season, and geographical region, with further evaluation of co-detection patterns.

The results showed that the pathogen detection rate was highest in preschool children (0–5 years group) at 60.59%, with Streptococcus pneumoniae (12.56%), Respiratory syncytial virus (6.43%), and Haemophilus influenzae (5.87%) being the most common. Seasonal analysis indicates that summer is the peak detection period (31.56%), while the distribution of pathogens varies significantly across different regions, with Streptococcus pneumoniae and Haemophilus influenzae being the dominant pathogens. The co-detection pattern shows that Streptococcus pneumoniae (23.57%) and Human herpesvirus 7 (HHV-7, 10.41%) are the most common co-detected pathogens.

In summary, ARI in Yunnan Province exhibits distinct age specificity, seasonality, and regional differences, with children and summer being the key focuses for prevention and control. These results provide epidemiological evidence for optimizing the prevention and clinical management strategies of ARI in Yunnan Province.

## Linked entities

- **Species:** Streptococcus pneumoniae (taxon 1313), Respiratory syncytial virus (taxon 12814), Haemophilus influenzae (taxon 727)

## Full-text entities

- **Diseases:** Coronavirus 229E (MESH:D003333), ARI (MESH:D012141), headache (MESH:D006261), EV (MESH:D004769), influenza (MESH:D007251), GBS (MESH:D020275), CMV (MESH:D003586), Respiratory (MESH:D012131), pneumonia (MESH:D011014), fever (MESH:D005334), runny nose (MESH:D000086722), sore throat (MESH:D010612), nasal congestion (MESH:D009668), COVID (MESH:D000086382), infection (MESH:D007239), cough (MESH:D003371), fungal (MESH:D009181), infectious diseases (MESH:D003141)
- **Chemicals:** FluA (-)
- **Species:** Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Candida albicans (species) [taxon 5476], EV [taxon 2844103], Escherichia coli (E. coli, species) [taxon 562], Pseudomonas aeruginosa (species) [taxon 287], Mycoplasmoides pneumoniae (Filterable agent of primary atypical pneumonia, species) [taxon 2104], Gastromermis sp. AS (species) [taxon 211381], Human respirovirus 3 (no rank) [taxon 11216], Chlamydia pneumoniae (species) [taxon 83558], Enterovirus (genus) [taxon 12059], Klebsiella pneumoniae (species) [taxon 573], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Bordetella pertussis (species) [taxon 520], Streptococcus pneumoniae (species) [taxon 1313], Human betaherpesvirus 7 (no rank) [taxon 10372], Human coronavirus 229E (no rank) [taxon 11137], human metapneumovirus (no rank) [taxon 162145], Bocaparvovirus (genus) [taxon 1507401], Respiratory syncytial virus (no rank) [taxon 12814], Viruses (acellular root) [taxon 10239], Adenoviridae (family) [taxon 10508], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Human respirovirus 1 (no rank) [taxon 12730], Staphylococcus aureus (species) [taxon 1280], Homo sapiens (human, species) [taxon 9606], Haemophilus influenzae (species) [taxon 727], Acinetobacter baumannii (species) [taxon 470], Legionella pneumophila (species) [taxon 446], Human betaherpesvirus 6 (species) [taxon 10368], Aspergillus (genus) [taxon 5052], Moraxella catarrhalis (species) [taxon 480], Cytomegalovirus (genus) [taxon 10358]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957258/full.md

## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957258/full.md

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Source: https://tomesphere.com/paper/PMC12957258