# Integrative multi-omics analysis reveals cellular and molecular insights into gestational diabetes mellitus

**Authors:** Niankun Chen, Shaole Shi, Huilin Xu, Shanshan Zhao, Letong Hong, Chumei Zeng, Yihong Huang, Lixia Shen, Dongyu Wang, Zilian Wang

PMC · DOI: 10.3389/fmolb.2026.1706588 · Frontiers in Molecular Biosciences · 2026-02-18

## TL;DR

This study uses multi-omics data to uncover immune and metabolic changes in gestational diabetes mellitus, identifying key genes that could help in early diagnosis and treatment.

## Contribution

The study integrates multiple omics layers to reveal cell-type-specific alterations and prioritizes novel candidate genes with potential causal links to GDM.

## Key findings

- Single-cell profiling revealed immune compartment remodeling in GDM, particularly in monocytes and T-cell subsets.
- MR analysis identified 15 genes, including CTSB, LMNA, and SLC7A5, with putative causal links to GDM.
- qPCR confirmed differential expression of CTSB, LMNA, and SLC7A5 in GDM placentas, linking them to immune and metabolic pathways.

## Abstract

Gestational diabetes mellitus (GDM) is a frequent pregnancy complication that increases short- and long-term risks for both mother and child. However, its underlying molecular mechanisms remain poorly understood. This study aims to unravel the molecular basis of GDM and explore potential therapeutic targets.

We integrated genomic, transcriptomic, and single-cell RNA sequencing datasets to delineate cell-type-specific alterations in GDM. Candidate genes were prioritized using Mendelian randomization (MR), followed by quantitative PCR (qPCR) validation in placental samples. Pathway and immune-network analyses were performed to contextualize biological function.

Single-cell profiling showed marked remodeling of immune compartments in GDM, with prominent changes in monocytes and T-cell subsets. Two-sample MR prioritized 15 genes with putative causal links to GDM, including BNIP3L, COMT, CTSB, LMNA, and SLC7A5. qPCR further demonstrated significant differential expression of CTSB, LMNA, and SLC7A5 between GDM and control placentas (human or mouse). Pathway enrichment implicated CTSB in immune regulation and metabolic processes, whereas LMNA and SLC7A5 mapped to insulin resistance and glucose/amino-acid transport pathways. Immune-network analysis revealed significant correlations between these genes and immune mediators, supporting immune dysregulation as a contributor to GDM pathogenesis.

This study provides a comprehensive analysis of the immune-metabolic landscape of GDM. Key genes identified in this study may serve as potential biomarkers and therapeutic targets for early diagnosis and personalized treatment of GDM. Further studies are warranted to elucidate the underlying mechanisms and develop targeted therapies for this disease.

## Linked entities

- **Genes:** BNIP3L (BCL2 interacting protein 3 like) [NCBI Gene 665], COMT (catechol-O-methyltransferase) [NCBI Gene 1312], CTSB (cathepsin B) [NCBI Gene 1508], LMNA (lamin A/C) [NCBI Gene 4000], SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140]
- **Diseases:** gestational diabetes mellitus (MONDO:0005406)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** FCER1G (Fc epsilon receptor Ig) [NCBI Gene 2207] {aka FCRG}, Slc7a5 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 5) [NCBI Gene 20539] {aka 4F2LC, D0H16S474E, Gm42049, LAT1, TA1}, PDE4D (phosphodiesterase 4D) [NCBI Gene 5144] {aka ACRDYS2, DPDE3, HSPDE4D, PDE43, PDE4DN2, STRK1}, Ctsb (cathepsin B) [NCBI Gene 13030] {aka APPM, CB}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, TMEM176B (transmembrane protein 176B) [NCBI Gene 28959] {aka LR8, MS4B2}, DNAJB1 (DnaJ heat shock protein family (Hsp40) member B1) [NCBI Gene 3337] {aka HSPF1, Hdj1, Hsp40, RSPH16B, Sis1}, TBXAS1 (thromboxane A synthase 1) [NCBI Gene 6916] {aka BDPLT14, CYP5, CYP5A1, GHOSAL, THAS, TS}, CYB5A (cytochrome b5 type A) [NCBI Gene 1528] {aka CYB5, MCB5, METAG}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, CTSB (cathepsin B) [NCBI Gene 1508] {aka APPS, CPSB, KWE, RECEUP}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, S100A12 (S100 calcium binding protein A12) [NCBI Gene 6283] {aka CAAF1, CAGC, CGRP, ENRAGE, MRP-6, MRP6}, PDCD1LG2 (programmed cell death 1 ligand 2) [NCBI Gene 80380] {aka B7DC, Btdc, CD273, PD-L2, PDCD1L2, PDL2}, Lmna (lamin A) [NCBI Gene 16905] {aka Dhe}, SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140] {aka 4F2LC, CD98, D16S469E, E16, LAT1, MPE16}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, SERPINB2 (serpin family B member 2) [NCBI Gene 5055] {aka HsT1201, PAI, PAI-2, PAI2, PLANH2}, TCF7L2 (transcription factor 7 like 2) [NCBI Gene 6934] {aka TCF-4, TCF4}, INSIG1 (insulin induced gene 1) [NCBI Gene 3638] {aka CL6}, LMNA (lamin A/C) [NCBI Gene 4000] {aka CDCD1, CDDC, CMD1A, CMT2B1, EMD2, FPL}, COMT (catechol-O-methyltransferase) [NCBI Gene 1312] {aka HEL-S-98n}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, LGALS3 (galectin 3) [NCBI Gene 3958] {aka CBP35, GAL3, GALBP, GALIG, L31, LGALS2}, MAN1A1 (mannosidase alpha class 1A member 1) [NCBI Gene 4121] {aka HUMM3, HUMM9, MAN9}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, BNIP3L (BCL2 interacting protein 3 like) [NCBI Gene 665] {aka BNIP3a, NIP3L, NIX}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, HLA-F (major histocompatibility complex, class I, F) [NCBI Gene 3134] {aka CDA12, HLA-5.4, HLA-CDA12, HLAF}
- **Diseases:** beta-cell dysfunction (MESH:D007340), nephropathy (MESH:D007674), type 2 diabetes (MESH:D003924), immune dysregulation (OMIM:614878), pregnancy complication (MESH:D011248), insulin resistance (MESH:D007333), placental disturbances (MESH:D010922), cardiovascular disease (MESH:D002318), neonatal hypoglycemia (MESH:D007003), retinopathy (MESH:D058437), GDM (MESH:D016640), obesity (MESH:D009765), respiratory distress (MESH:D012128), hyperglycemia (MESH:D006943), metabolic syndrome (MESH:D024821), inflammation (MESH:D007249), complication (MESH:D008107), preeclampsia (MESH:D011225), diabetes (MESH:D003920), macrosomia (MESH:D005320)
- **Chemicals:** calcium (MESH:D002118), glucose (MESH:D005947), carbohydrate (MESH:D002241), heme (MESH:D006418), amino-acid (MESH:D000596), TRIzol (MESH:C411644), fat (MESH:D005223)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** LM22 — Homo sapiens (Human), Astrocytoma, Cancer cell line (CVCL_A1IU)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957148/full.md

## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957148/full.md

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Source: https://tomesphere.com/paper/PMC12957148