# Metabolic changes in mTOR pathway-associated cortical malformation

**Authors:** Aditi Biswas, Philip H. Iffland

PMC · DOI: 10.3389/fnins.2026.1726799 · Frontiers in Neuroscience · 2026-02-18

## TL;DR

This review explores how metabolic changes in the mTOR pathway may contribute to brain development disorders and their associated conditions like epilepsy and autism.

## Contribution

The paper provides a comprehensive overview of metabolic changes in mTORopathies, a common cause of cortical malformations.

## Key findings

- mTORopathies are linked to dysfunctional brain metabolism, including macromolecule processing issues.
- Abnormal mitochondrial metabolism is a key feature in mTOR pathway-associated cortical malformations.
- Metabolic processes may underlie common mTORopathy phenotypes and sustain abnormal brain activity.

## Abstract

Malformations of cortical development (MCD) are a common cause of epilepsy, autism spectrum disorder (ASD), and intellectual disability (ID). A unifying mechanistic etiology for epilepsy, ASD, and ID has not been found due, in part, to the heterogeneity of MCD subtypes. However, changes in brain metabolism within MCD have emerged as a possible convergent mechanism across MCD that may have therapeutic potential. While there have been efforts to comprehensively describe known metabolic changes in other neurodevelopmental disorders, no such effort exists for MCD associated with mTOR pathway gene mutations (the most common cause of MCD; mTORopathies’). In this review, we detail finding related to mTORopathies that relate to dysfunctional brain metabolism including abnormal changes in macromolecule processing and mitochondrial metabolism. Further, we discuss cellular and molecular metabolic processes that may serve as key pathways in the development of MCD in utero and that may ultimately produce common mTORopathy phenotypes and sustain abnormal brain activity post-development.

## Linked entities

- **Diseases:** epilepsy (MONDO:0005027), autism spectrum disorder (MONDO:0005258), intellectual disability (MONDO:0001071)

## Full-text entities

- **Genes:** MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Tsc2 (TSC complex subunit 2) [NCBI Gene 22084] {aka Nafld, Tcs2}, Tsc1 (TSC complex subunit 1) [NCBI Gene 64930], NPRL2 (NPR2 like, GATOR1 complex subunit) [NCBI Gene 10641] {aka FFEVF2, NPR2, NPR2L, TUSC4}, Hif1a (hypoxia inducible factor 1, alpha subunit) [NCBI Gene 15251] {aka HIF-1-alpha, HIF1-alpha, HIF1alpha, MOP1, bHLHe78}, Slc2a1 (solute carrier family 2 (facilitated glucose transporter), member 1) [NCBI Gene 20525] {aka GT1, Glut-1, Glut1, M100200, Rgsc200}, Gfap (glial fibrillary acidic protein) [NCBI Gene 14580], Slc7a5 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 5) [NCBI Gene 20539] {aka 4F2LC, D0H16S474E, Gm42049, LAT1, TA1}, NPRL3 (NPR3 like, GATOR1 complex subunit) [NCBI Gene 8131] {aka C16orf35, CGTHBA, FFEVF3, HS-40, MARE, NPR3}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, TSC1 (TSC complex subunit 1) [NCBI Gene 7248] {aka LAM, TSC}, DEPDC5 (DEP domain containing 5, GATOR1 subcomplex subunit) [NCBI Gene 9681] {aka DEE111, DEP.5, FFEVF, FFEVF1, FPEVF}, Eif4ebp1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 13685] {aka 4e-bp1, PHAS-I}, SLC25A19 (solute carrier family 25 member 19) [NCBI Gene 60386] {aka DNC, MCPHA, MTPPT, MUP1, THMD3, THMD4}, Glul (glutamate-ammonia ligase) [NCBI Gene 14645] {aka GS, Glns}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, TSC2 (TSC complex subunit 2) [NCBI Gene 7249] {aka LAM, PPP1R160, TSC4}, Pik3c2b (phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta) [NCBI Gene 240752] {aka C330011J12Rik, Gm199, PI3K-C2beta, PI3KC2beta}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, BBOX1 (gamma-butyrobetaine hydroxylase 1) [NCBI Gene 8424] {aka BBH, BBOX, G-BBH, gamma-BBH}, MLYCD (malonyl-CoA decarboxylase) [NCBI Gene 23417] {aka MCD}, EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 1978] {aka 4E-BP1, 4EBP1, BP-1, PHAS-I}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}
- **Diseases:** ID (MESH:D008607), premature death (MESH:D003643), pyruvate dehydrogenase deficiency (MESH:D015325), dysfunctional brain metabolism (MESH:D001928), epilepsies (MESH:D004827), neurometabolic abnormalities (MESH:D000014), lissencephaly (MESH:D054082), glutamate excitotoxicity (MESH:C537425), MCD (MESH:D054220), megalencephaly (MESH:D058627), malformations (MESH:C564254), ketosis (MESH:D007662), developmental delay (MESH:D002658), TSC (MESH:D014402), ASD (MESH:D000067877), mitochondrial disorders (MESH:D028361), inflammation (MESH:D007249), hyperglycemia (MESH:D006943), neurotoxicity (MESH:D020258), TLE (MESH:D004833), PMG (MESH:D065706), microcephaly (MESH:D008831), focal epilepsy (MESH:D004828), hemimegalencephaly (MESH:D065705), hypoxic (MESH:D002534), MCDs (MESH:C537834), fumarase (MESH:C538191), hypoxia (MESH:D000860), FCD (MESH:D000092222), GMH (MESH:D002549), seizure (MESH:D012640), metabolic (MESH:D008659)
- **Chemicals:** PTZ (MESH:D010433), proton (MESH:D011522), L-carnitine (MESH:D002331), octanoic acid (MESH:C031492), FADH (-), TCA (MESH:D014238), phenylalanine (MESH:D010649), serine (MESH:D012694), phosphocreatine (MESH:D010725), creatine (MESH:D003401), carbohydrate (MESH:D002241), Fatty acids (MESH:D005227), Amino acids (MESH:D000596), N-acetyl aspartate (MESH:C000179), Lipids (MESH:D008055), ATP (MESH:D000255), Glutamine (MESH:D005973), decanoic acid (MESH:C031071), Glucose (MESH:D005947), threonine (MESH:D013912), ROS (MESH:D017382), PI(3,4)P2 (MESH:C118301), NADH (MESH:D009243), tryptophan (MESH:D014364), phosphatidylinositol (MESH:D010716), oxygen (MESH:D010100), pyruvate (MESH:D019289), methionine (MESH:D008715), triglycerides (MESH:D014280), Pentose phosphate (MESH:D010428), Lactate (MESH:D019344), histidine (MESH:D006639), glycogen (MESH:D006003), nucleotide (MESH:D009711), acetyl-CoA (MESH:D000105), leucine (MESH:D007930), phospholipids (MESH:D010743), asparagine (MESH:D001216), cholesterol (MESH:D002784), ketone bodies (MESH:D007657), thiamine pyrophosphate (MESH:D013835), GABA (MESH:D005680), Glutamate (MESH:D018698)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Dictyostelium discoideum (species) [taxon 44689], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** glutamate is converted to glutamine
- **Cell lines:** D. discoideum — Mus musculus (Mouse), Hybridoma (CVCL_A9H6)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12957139/full.md

## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC12957139/full.md

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Source: https://tomesphere.com/paper/PMC12957139