# Interplay between flaviviruses and the interferon response: mechanisms of immune evasion and therapeutic implications

**Authors:** Jiayin Han, Yue Yin, Jing Yuan

PMC · DOI: 10.3389/fphar.2026.1745652 · Frontiers in Pharmacology · 2026-02-18

## TL;DR

This review explores how flaviviruses like dengue and Zika evade the body's interferon defenses and the implications for developing new treatments.

## Contribution

The paper systematically summarizes flavivirus immune evasion mechanisms and their implications for therapeutic development.

## Key findings

- Flaviviruses use viral proteins to target key host factors in interferon signaling pathways.
- Interferons have dual roles at placental and blood-brain barriers, balancing antiviral effects and immunopathology.
- Harnessing the interferon pathway offers therapeutic potential but requires further in vivo studies.

## Abstract

The genus Orthoflavivirus encompasses a group of medically significant arthropod-borne viruses, such as dengue virus (DENV), Japanese encephalitis virus West Nile virus Zika virus (ZIKV), and others, which pose persistent global public health threats. The host interferon (IFN) system constitutes a pivotal first line of defense against these viral infections. However, orthoflaviviruses have evolved a remarkable array of sophisticated strategies to antagonize both the induction and signaling pathways of type I and III IFNs. This review systematically summarizes the mechanisms by which orthoflaviviruses evade the IFN response, primarily by employing viral proteins to target key host factors in pattern recognition receptor signaling pathways (e.g., RIG-I, MDA5, MAVS, TBK1, STING, IRF3) and the JAK-STAT signaling cascade (e.g., STAT1, STAT2, IFNAR1). Furthermore, we highlight the critical and complex roles of IFNs at the placental and blood-brain barriers (BBB), the primary sites for transplacental transmission and neuroinvasion. At these barriers, IFNs play a dual role: they exert essential antiviral effects to restrict viral replication, but may also contribute to immunopathology. The delicate balance of IFN responses determines the outcomes of congenital infection and neurological diseases. Finally, we discuss the therapeutic potential of harnessing the IFN pathway, while also acknowledging the challenges and need for further in vivo studies to translate these insights into effective treatments for flavivirus-associated diseases.

## Linked entities

- **Genes:** RIGI (RNA sensor RIG-I) [NCBI Gene 23586], IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135], MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506], TBK1 (TANK binding kinase 1) [NCBI Gene 29110], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], IRF3 (interferon regulatory factor 3) [NCBI Gene 3661], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772], STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773], IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454]
- **Diseases:** dengue (MONDO:0005502), Japanese encephalitis (MONDO:0019209), Zika (MONDO:0018661)

## Full-text entities

- **Genes:** TRIM25 (tripartite motif containing 25) [NCBI Gene 7706] {aka EFP, RNF147, Z147, ZNF147}, cno (canoe) [NCBI Gene 40620] {aka AF-6, CG2534, CG31537, CG42312, Canoe, Dmel\CG42312}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IFNL2 (interferon lambda 2) [NCBI Gene 282616] {aka IFNL2a, IFNL3a, IL-28A, IL28A}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, Ifnar1 (interferon (alpha and beta) receptor 1) [NCBI Gene 15975] {aka Ifar, Ifnar, Ifrc, Infar}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, AFDN (afadin, adherens junction formation factor) [NCBI Gene 4301] {aka AF6, MLL-AF6, MLLT4, l-afadin}, IFNGR2 (interferon gamma receptor 2) [NCBI Gene 3460] {aka AF-1, IFGR2, IFNGT1, IMD28}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, CTBS (chitobiase) [NCBI Gene 1486] {aka CTB}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, ZSWIM8 (zinc finger SWIM-type containing 8) [NCBI Gene 23053] {aka KIAA0913}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, MIR301A (microRNA 301a) [NCBI Gene 407027] {aka MIR301, MIRN301, MIRN301A, mir-301a}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, PEPD (peptidase D) [NCBI Gene 5184] {aka PROLIDASE}, DDX42 (DEAD-box helicase 42) [NCBI Gene 11325] {aka DDX42P, RHELP, RNAHP, SF3B8, SF3b125}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, IRF1 (interferon regulatory factor 1) [NCBI Gene 3659] {aka IMD117, IRF-1, MAR}, IKBKE (inhibitor of nuclear factor kappa B kinase subunit epsilon) [NCBI Gene 9641] {aka IKK-E, IKK-i, IKKE, IKKI}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL10RB (interleukin 10 receptor subunit beta) [NCBI Gene 3588] {aka CDW210B, CRF2-4, CRFB4, D21S58, D21S66, IBD25}, TLR9 (toll like receptor 9) [NCBI Gene 54106] {aka CD289}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, arm (armadillo) [NCBI Gene 31151] {aka Armadillo, CG11579, Dm Arm, Dmel\CG11579, EG:86E4.6, beta-Cat}, SPINK5 (serine peptidase inhibitor Kazal type 5) [NCBI Gene 11005] {aka LEKTI, LETKI, NETS, NS, VAKTI}, TYK2 (tyrosine kinase 2) [NCBI Gene 7297] {aka IMD35, JTK1}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, TICAM1 (TIR domain containing adaptor molecule 1) [NCBI Gene 148022] {aka IIAE6, MyD88-3, PRVTIRB, TICAM-1, TRIF}, IFNLR1 (interferon lambda receptor 1) [NCBI Gene 163702] {aka CRF2/12, IFNLR, IL-28R1, IL28RA, LICR2}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, CLDN5 (claudin 5) [NCBI Gene 7122] {aka AWAL, BEC1, CPETRL1, TMDVCF, TMVCF}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IVNS1ABP (influenza virus NS1A binding protein) [NCBI Gene 10625] {aka ARA3, FLARA3, HSPC068, IMD70, KLHL39, ND1}, TRIM21 (tripartite motif containing 21) [NCBI Gene 6737] {aka RNF81, RO52, Ro/SSA, SSA, SSA1, TRIM21/Ro52}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, USP18 (ubiquitin specific peptidase 18) [NCBI Gene 11274] {aka ISG43, PTORCH2, UBP43}, DDX25 (DEAD-box helicase 25) [NCBI Gene 29118] {aka GRTH}, STAT2 (signal transducer and activator of transcription 2) [NCBI Gene 6773] {aka IMD44, ISGF-3, P113, PTORCH3, STAT113}, AXL (AXL receptor tyrosine kinase) [NCBI Gene 558] {aka ARK, AXL3, JTK11, Tyro7, UFO}, alpha-Cat (alpha Catenin) [NCBI Gene 40517] {aka CG17947, CT39986, D-alpha-catenin, Dalpha-Cat, Dalpha-cat, DalphaC}, TLR8 (toll like receptor 8) [NCBI Gene 51311] {aka CD288, IMD98, TLR-8, hTLR8}, JAK1 (Janus kinase 1) [NCBI Gene 3716] {aka AIIDE, JAK1A, JAK1B, JTK3}, MBL3P (mannose-binding lectin family member 3, pseudogene) [NCBI Gene 50639] {aka COLEC2, MBL}, DHX58 (DExH-box helicase 58) [NCBI Gene 79132] {aka D11LGP2, D11lgp2e, LGP2, RLR-3}, IRF7 (interferon regulatory factor 7) [NCBI Gene 3665] {aka IMD39, IRF-7, IRF-7H, IRF7A, IRF7B, IRF7C}, DHCR7 (7-dehydrocholesterol reductase) [NCBI Gene 1717] {aka SLOS}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, IFIT1 (interferon induced protein with tetratricopeptide repeats 1) [NCBI Gene 3434] {aka C56, G10P1, IFI-56, IFI-56K, IFI56, IFIT-1}, RPS6 (ribosomal protein S6) [NCBI Gene 6194] {aka S6, eS6}, SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1) [NCBI Gene 6654] {aka GF1, GGF1, GINGF, HGF, NS4, SOS-1}, shg (shotgun) [NCBI Gene 37386] {aka CADH, CG3722, CT12481, Cad, CadE, Cadh}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}
- **Diseases:** syphilis (MESH:D013587), IUGR (MESH:D005317), neuroinvasive disease (MESH:D004194), congenital injury (MESH:D014947), DHF (MESH:D019595), headache (MESH:D006261), inflammatory (MESH:D007249), JE (MESH:D004672), meningoencephalitis (MESH:D008590), OHF (MESH:D006481), hemorrhagic fever (MESH:D006480), influenza (MESH:D007251), intracranial calcifications (MESH:C537905), WNF (MESH:D014901), congenital syndromes (MESH:D008209), KFDV (MESH:D007733), Guillain-Barre syndrome (MESH:D020275), hepatosplenomegaly (MESH:C535727), meningitis (MESH:D008580), NLRs (MESH:D020191), multiple abnormalities (MESH:D000015), AFP (MESH:C000629404), DENV infection (MESH:D003715), hemorrhage (MESH:D006470), neurological diseases (MESH:D020271), hypoxic (MESH:D002534), cytomegalovirus (MESH:D003586), lymphadenopathy (MESH:D008206), conjunctival congestion (MESH:D003229), congenital microcephaly (MESH:D008831), jaundice (MESH:D007565), viremia (MESH:D014766), fever (MESH:D005334), neurological disorders (MESH:D009461), SLE (MESH:D008180), birth defects (MESH:D000014), JAMs (MESH:C535692), viral infections (MESH:D014777), TORCH (MESH:C535607), death (MESH:D003643), fetal resorption (MESH:D005327), gastrointestinal disturbances (MESH:D005767), placental infection (MESH:D010922), chills (MESH:D023341), encephalitis (MESH:D004660), congenital infection (MESH:D007239), cough (MESH:D003371), herpes simplex virus (MESH:D006561), rubella virus (MESH:D012409), myalgia (MESH:D063806), poliomyelitis (MESH:D011051), flavivirus (MESH:D018177), TBE (MESH:D004675), CZS (MESH:D000071243), ventriculomegaly (MESH:D006849), Yellow fever (MESH:D015004), neurological sequelae (MESH:D009422), SLEV (MESH:D004674)
- **Chemicals:** Ivermectin (MESH:D007559), glycan (MESH:D011134), TY014 (MESH:C000709783), water (MESH:D014867), 2',3'-cyclic GMP-AMP (-), guanine nucleotide (MESH:D006150), cyclic GMP-AMP (MESH:C584311), lipid (MESH:D008055)
- **Species:** Aedes albopictus (Asian tiger mosquito, species) [taxon 7160], Aedes aegypti (yellow fever mosquito, species) [taxon 7159], Culex tritaeniorhynchus (species) [taxon 7178], Ixodes ricinus (castor bean tick, species) [taxon 34613], Yellow fever virus (no rank) [taxon 11089], Japanese encephalitis virus (no rank) [taxon 11072], Zika virus (no rank) [taxon 64320], Mus musculus (house mouse, species) [taxon 10090], Dermacentor marginatus (species) [taxon 49202], Dermacentor reticulatus (species) [taxon 57047], Human immunodeficiency virus 1 (no rank) [taxon 11676], Sus scrofa (pig, species) [taxon 9823], Toxoplasma gondii (species) [taxon 5811], Macaca mulatta (rhesus macaque, species) [taxon 9544], Kyasanur Forest disease virus (no rank) [taxon 33743], Cercopithecidae (monkey, family) [taxon 9527], Microtus arvalis (common vole, species) [taxon 47230], Dothidea sp. ENV1 (species) [taxon 154308], Homo sapiens (human, species) [taxon 9606], Omsk hemorrhagic fever virus (no rank) [taxon 12542], Plasmodium (subgenus) [taxon 418103], Dengue virus (no rank) [taxon 12637], Ixodes persulcatus (taiga tick, species) [taxon 34615], Equus caballus (domestic horse, species) [taxon 9796], Tick-borne encephalitis virus (no rank) [taxon 11084], flavivirus [taxon 11051], West Nile virus (no rank) [taxon 11082]
- **Cell lines:** CHME3 — Homo sapiens (Human), Transformed cell line (CVCL_II76), Hofbauer cell — Muntiacus muntjak (Barking deer), Spontaneously immortalized cell line (CVCL_9126), HTR8 — Homo sapiens (Human), Finite cell line (CVCL_D728)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12956798/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956798/full.md

## References

190 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956798/full.md

---
Source: https://tomesphere.com/paper/PMC12956798