# Case Report: Identification of a de novo missense variant in the N-terminal zinc-finger domain of ZEB2 in a patient presenting with neurodevelopmental delay and recurrent pulmonary infections

**Authors:** Jing Chen, Xiaodong Jiang, Wei Su, Jingjing Li, Shuang Chen, Ke Xu, Juxian Teng, Weihong Zhang, Hongmin Zhu

PMC · DOI: 10.3389/fgene.2026.1778727 · Frontiers in Genetics · 2026-02-18

## TL;DR

A 3-year-old boy with a rare ZEB2 gene variant showed developmental delays and frequent infections, which improved with zinc supplementation.

## Contribution

This is the first report of a likely pathogenic missense variant in the N-terminal zinc-finger domain of ZEB2.

## Key findings

- The patient had a de novo ZEB2 variant (c.652C>T, p.Arg218Trp) in the N-terminal zinc-finger domain.
- Zinc supplementation reduced respiratory infections and normalized immune parameters in the patient.
- The case expands the phenotypic spectrum of ZEB2-related disorders beyond classical Mowat–Wilson syndrome.

## Abstract

Heterozygous variants in the ZEB2 gene are known to cause Mowat–Wilson syndrome (MWS). The classical clinical spectrum of MWS includes characteristic facial features, intellectual disability, epilepsy, Hirschsprung disease (HSCR), and various congenital malformations. Reported pathogenic variants have predominantly been truncating variants or missense variants involving the C-terminal zinc-finger domain. To date, no disease-causing missense variant affecting the N-terminal zinc-finger domain has been documented.

We report a 3-year-old boy presenting with characteristic facial features, global developmental delay, and recurrent respiratory tract infections. Trio-based exome sequencing identified a de novo heterozygous missense variant in ZEB2, c.652C>T (p. Arg218Trp), located within the N-terminal zinc-finger domain. The patient exhibited a phenotype distinct from classical MWS, characterized by atypical facial dysmorphisms (including an elongated face, midface hypoplasia/depression, frontal bossing, esotropia, and hypertelorism), global developmental delay, and recurrent respiratory infections. Following comprehensive rehabilitation therapy (motor, cognitive, and language training) combined with oral zinc supplementation (elemental zinc 5 mg/day, approximately 0.3 mg/kg), the patient showed a marked reduction in respiratory infections and normalization of immune parameters after 12 months of treatment.

This report describes a patient with a de novo missense variant in the N-terminal zinc-finger domain of ZEB2 who presented with neurodevelopmental delay, atypical facial features, and recurrent respiratory infections, alongside a reduction in infection frequency during zinc supplementation. The variant is classified as likely pathogenic, and these observations expand the phenotypic variability potentially associated with ZEB2 variants. Additional cases and functional studies are required to confirm any causal link between the variant, the observed phenotype, and the effects of zinc supplementation.

## Linked entities

- **Genes:** ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839]
- **Chemicals:** zinc (PubChem CID 23994)
- **Diseases:** Mowat–Wilson syndrome (MONDO:0009341), Hirschsprung disease (MONDO:0007723)

## Full-text entities

- **Genes:** CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839] {aka HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}
- **Diseases:** premature rupture of membranes (MESH:D005322), cough (MESH:D003371), bronchopulmonary dysplasia (MESH:D001997), congenital heart defects (MESH:D006330), infection (MESH:D007239), neurodevelopmental delay (MESH:D006968), hypertelorism (MESH:D006972), bronchitis (MESH:D001991), immune dysfunction (MESH:D007154), midface hypoplasia (MESH:C564570), antibody deficiency (MESH:D007153), intellectual disability (MESH:D008607), pneumococcal infections (MESH:D011008), MWS (MESH:C536990), epilepsy (MESH:D004827), asplenia (MESH:D059446), elongated face (MESH:C538010), sepsis (MESH:D018805), esotropia (MESH:D004948), developmental delay (MESH:D002658), patent foramen ovale (MESH:D054092), hydrocele (MESH:D006848), constipation (MESH:D003248), low (MESH:D009800), depression (MESH:D003866), immunoglobulin deficiencies (MESH:D004406), hyposplenia (OMIM:271400), meningitis (MESH:D008580), acrodermatitis enteropathica (MESH:C538178), inguinal hernia (MESH:D006552), congenital malformations (OMIM:163000), pulmonary infections (MESH:D012141), multisystem abnormalities (MESH:C564954), Wilson disease (MESH:D006527), bronchopneumonia (MESH:D001996), scaphocephaly (MESH:D003398), seizure (MESH:D012640), autosomal dominant disorder (MESH:D030342), fever (MESH:D005334), pneumonia (MESH:D011014), microcephaly (MESH:D008831), neonatal respiratory distress syndrome (MESH:D012127), frontal bossing (MESH:D020233), HSCR (MESH:D006627), facial dysmorphism (MESH:C565579)
- **Chemicals:** Zinc (MESH:D015032), metal (MESH:D008670)
- **Species:** Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]
- **Mutations:** Arg218

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956690/full.md

## References

24 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956690/full.md

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Source: https://tomesphere.com/paper/PMC12956690