# Antigen specificity of clonally enriched CD8+ T cells in multiple sclerosis

**Authors:** Fumie Hayashi, Kristen Mittl, Ravi Dandekar, Josiah Gerdts, Ebtesam Hassan, Ryan D. Schubert, Lindsay Oshiro, Rita Loudermilk, Ariele Greenfield, Danillo G. Augusto, Gregory Havton, Shriya Anumarlu, Arhan Surapaneni, Akshaya Ramesh, Edwina Tran, Kanishka Koshal, Kerry Kizer, Joanna Dreux, Alaina K. Cagalingan, Florian Schustek, Lena Flood, Tamson Moore, Lisa L. Kirkemo, Isabelle J. Fisher, Tiffany Cooper, Meagan Harms, Refujia Gomez, Tiffany Cooper, Tiffany Cooper, Meagan Harms, Refujia Gomez, Ahmed Abdelhak, Sergio Baranzini, Riley Bove, Stacy Caillier, Richard Cuneo, Jeffrey Gelfand, Ari Green, Joanne Guo, Sasha Gupta, Harkee Halait, Roland G. Henry, Jill A. Hollenbach, Jorge R. Oksenberg, Nico Papinutto, Samuel Pleasure, Adam Renschen, Simone Sacco, Adam Santaniello, Anna Sindalovsky, Bruce A. C. Cree, Stephen L. Hauser, Michael R. Wilson, Scott S. Zamvil, Joseph J. Sabatino, Claire D. Clelland, Leah Sibener, Bruce A. C. Cree, Stephen L. Hauser, Jill A. Hollenbach, Marvin Gee, Michael R. Wilson, Scott S. Zamvil, Joseph J. Sabatino

PMC · DOI: 10.1038/s41590-025-02412-3 · Nature Immunology · 2026-02-05

## TL;DR

This study identifies CD8+ T cell clonotypes in MS patients that react to Epstein–Barr virus, suggesting a potential role for EBV in MS development.

## Contribution

The study reveals specific CD8+ T cell clonotypes in MS patients with reactivity to EBV antigens, linking EBV to MS immunopathology.

## Key findings

- 23 highly expanded and activated CD8+ T cell clonotypes were identified in MS cerebrospinal fluid.
- Six CD8+ T cell clonotypes recognized EBV antigens and novel mimotopes.
- EBV DNA and transcripts were detected in cerebrospinal fluid of MS patients with EBV-specific CD8+ T cells.

## Abstract

CD8+ T cells are the dominant clonally expanded lymphocyte population in multiple sclerosis (MS) lesions but their clonal identity, function and antigen specificity are not well understood. A comprehensive single-cell RNA-sequencing and T cell receptor-sequencing analysis of the cerebrospinal fluid and blood from individuals in the MS and control cohorts revealed a subset of 23 highly expanded and activated CD8+ T cell clonotypes that were enriched predominantly in the cerebrospinal fluid in the MS cohort. Using unbiased and targeted antigen discovery approaches, six CD8+ T cell clonotypes recognizing Epstein–Barr virus (EBV) antigens and multiple novel mimotopes were identified. Although the majority of mimotopes did not elicit functional responses, three of the expanded CD8+ T cell receptors from patients with MS were reactive to EBV. EBV DNA and transcripts were detected in cerebrospinal fluid, including in patients with MS who had highly expanded EBV-specific CD8+ T cells. These findings shed vital insight into the role of CD8+ T cells in MS and support an important role of EBV in MS immunopathology.

Sabatino and colleagues examine expanded CD8+ T cell clonotypes from a small cohort of multiple sclerosis patients. They identified several cognate peptide epitopes that derive from Epstein–Barr virus, suggesting EBV reactivation may drive pathogenesis in these patients.

## Linked entities

- **Diseases:** multiple sclerosis (MONDO:0005301)

## Full-text entities

- **Genes:** CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** MS) (MESH:D009103)
- **Species:** human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12956596/full.md

## Figures

18 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956596/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956596/full.md

---
Source: https://tomesphere.com/paper/PMC12956596