# Demographic and genetic factors shape the epitope specificity of the human antibody repertoire against viruses

**Authors:** Axel Olin, Christian Pou, Anthony Jaquaniello, Jack Crook, Ziyang Tan, Maguelonne Roux, Florian Dubois, Bruno Charbit, Dang Liu, Françoise Donnadieu, Laura Garcia, Camille Lambert, Emma Bloch, Emmanuel Clave, Itauá Leston Araujo, Antoine Toubert, Maxime Rotival, Etienne Simon-Lorière, Michael White, Petter Brodin, Darragh Duffy, Lluis Quintana-Murci, Etienne Patin

PMC · DOI: 10.1038/s41590-026-02432-7 · Nature Immunology · 2026-02-16

## TL;DR

This study shows how age, sex, birth continent, and genetics influence the human antibody response to viruses, offering insights for better vaccine design.

## Contribution

The study provides a comprehensive analysis of how demographic and genetic factors shape antiviral antibody repertoires using a large-scale dataset.

## Key findings

- Age, sex, and continent of birth significantly influence the specific viral epitopes targeted by antibodies.
- Genetic variants at HLA, FUT2, IGH, and IGK loci are strongly associated with antibodies against 34 viruses.
- Antibodies to conserved influenza A epitopes increase with age, while those to rapidly evolving epitopes decrease.

## Abstract

Antibodies are central to immune defenses. Despite advances in understanding the mechanisms of antibody generation, a comprehensive model of how intrinsic and external factors shape human humoral responses to viruses has been lacking. Here we apply phage immunoprecipitation sequencing to investigate the effects of demographic factors—including 108 lifestyle and health-related variables—and genetic variation on antibody reactivity to over 97,000 viral peptides in 1,212 healthy adults. We demonstrate that age, sex and continent of birth extensively affect not only the viruses but also the specific viral epitopes targeted by the antibody repertoire. Notably, we find that antibodies against rapidly evolving epitopes of influenza A virus decrease with age, whereas immunoreactivity to conserved epitopes increases. Furthermore, we identify strong associations between antibodies against 34 viruses and genetic variants at HLA, FUT2, IGH and IGK loci, some of which increase autoimmune disease risk. These findings offer a valuable resource for understanding the factors affecting antibody-mediated immunity, laying the groundwork for optimizing vaccine strategies.

Patin and colleagues present a mineable Resource database for identifying demographic and genetic factors that impact antiviral antibody repertoires in humans.

## Linked entities

- **Genes:** FUT2 (fucosyltransferase 2 (H blood group)) [NCBI Gene 2524], IGH (immunoglobulin heavy locus) [NCBI Gene 3492], IGK (immunoglobulin kappa locus) [NCBI Gene 50802]
- **Diseases:** autoimmune disease (MONDO:0007179)

## Full-text entities

- **Genes:** ADH1A (alcohol dehydrogenase 1A (class I), alpha polypeptide) [NCBI Gene 124] {aka ADH1}, IGHE (immunoglobulin heavy constant epsilon) [NCBI Gene 3497] {aka IgE}, CD14 (CD14 molecule) [NCBI Gene 929], ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, IGH (immunoglobulin heavy locus) [NCBI Gene 3492] {aka IGD1, IGH.1@, IGH@, IGHD@, IGHDY1, IGHJ}, LOC102723407 (immunoglobulin heavy variable 4-38-2-like) [NCBI Gene 102723407] {aka IGHV4, IGHV4-30, IGHV4-38-2, IGHV4-39, IGHV4-b, IGVH4-39}, IGHV3-64 (immunoglobulin heavy variable 3-64) [NCBI Gene 28414] {aka IGHV364, VH}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, HLA-DRB1 (major histocompatibility complex, class II, DR beta 1) [NCBI Gene 3123] {aka DRB1, HLA-DR1B, HLA-DRB, SS1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, FUT2 (fucosyltransferase 2 (H blood group)) [NCBI Gene 2524] {aka B12QTL1, SE, SEC2, Se2, sej}, HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1) [NCBI Gene 3117] {aka CELIAC1, DQ-A1, DQA1, HLA-DQA, HLA-DQA1*}, IGHV1-69 (immunoglobulin heavy variable 1-69) [NCBI Gene 28461] {aka IGHV1-E, IGHV169, IGHV1E}, IGK (immunoglobulin kappa locus) [NCBI Gene 50802] {aka IGK@}, COLQ (collagen like tail subunit of asymmetric acetylcholinesterase) [NCBI Gene 8292] {aka CMS5, EAD}, IGL (immunoglobulin lambda locus) [NCBI Gene 3535] {aka IGL@}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}
- **Diseases:** EBV (MESH:D020031), diarrheal (MESH:D004403), rheumatoid arthritis (MESH:D001172), gastroenteritis (MESH:D005759), norovirus infection (MESH:D017250), viral infections (MESH:D014777), AVARDA (MESH:D007153), IAV (MESH:D007251), immune disorders (MESH:D007154), infection (MESH:D007239), mumps (MESH:D009107), hepatitis C. (MESH:D019698), hepatitis B (MESH:D006509), rubella (MESH:D012409), common (MESH:D020326), inflammatory bowel disease (MESH:D015212), CMV (MESH:D003586), common cold (MESH:D003139), autoimmune conditions (MESH:D001327), VZV (MESH:D000073618), measles (MESH:D008457), respiratory (MESH:D012131), type 1 diabetes (MESH:D003922), sandfly fever Sicilian virus (MESH:D010217), infectious immune diseases (MESH:D003141), lupus (MESH:D008180)
- **Chemicals:** 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (MESH:C000613388), AFB (-), NTA (MESH:D009571), MgSO4 (MESH:D008278), EDTA (MESH:D004492), Ni (MESH:D009532), phenol (MESH:D019800), adipic acid dihydrazide (MESH:C010011), chloroform (MESH:D002725), TN (MESH:C009497), PBS (MESH:D007854), 2-(N-morpholino)ethane sulfonic acid (MESH:C004550), EDC (MESH:C024565), sodium propionate (MESH:C514135), glucose (MESH:D005947), ethanol (MESH:D000431)
- **Species:** Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Respiratory syncytial virus (no rank) [taxon 12814], Norovirus (genus) [taxon 142786], Orthomyxoviridae (family) [taxon 11308], Hepatovirus A (no rank) [taxon 12092], Human immunodeficiency virus (species) [taxon 12721], Rubella virus (no rank) [taxon 11041], Adenoviridae (family) [taxon 10508], Kobuvirus aichi (species) [taxon 72149], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Human betaherpesvirus 6A (no rank) [taxon 32603], Polyomavirus sp. (species) [taxon 36362], Homo sapiens (human, species) [taxon 9606], H3N2 subtype (serotype) [taxon 119210], Salivirus A (no rank) [taxon 1330524], Human papillomavirus (species) [taxon 10566], Enterovirus (genus) [taxon 12059], Human coronavirus NL63 (no rank) [taxon 277944], Human gammaherpesvirus 8 (no rank) [taxon 37296], Enterovirus B (no rank) [taxon 138949], sandfly fever Sicilian virus (no rank) [taxon 28292], Influenza A virus (no rank) [taxon 11320], Human alphaherpesvirus 3 (Varicella-zoster virus, no rank) [taxon 10335], Bacteriophage sp. (species) [taxon 38018], Human betaherpesvirus 6 (species) [taxon 10368], H5N1 subtype (serotype) [taxon 102793], Human alphaherpesvirus 2 (no rank) [taxon 10310], H1N1 subtype (serotype) [taxon 114727], Nicotiana tabacum (American tobacco, species) [taxon 4097], Cytomegalovirus (genus) [taxon 10358], Rhinovirus B (no rank) [taxon 147712]
- **Mutations:** G>A, rs59595881, rs1024350, rs9671760, rs601338
- **Cell lines:** OC43 — Homo sapiens (Human), Ovarian serous cystadenocarcinoma, Cancer cell line (CVCL_A1GZ), B95-8 — Saguinus oedipus (Cotton-top tamarin), Transformed cell line (CVCL_1953), HKU1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), NL63 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_1E71), Expi293F — Homo sapiens (Human), Transformed cell line (CVCL_D615)

## Full text

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## Figures

16 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956577/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956577/full.md

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Source: https://tomesphere.com/paper/PMC12956577