# Methyl-CpG-binding domain protein 2 epigenetically represses monocyte HLA-DR expression and promotes immune paralysis in HBV-related acute-on-chronic liver failure

**Authors:** Xiaoqin Liu, Xuhua Jiang, Xueyun Zhang, Qiankun Hu, Xueping Yu, Jian Sun, Mingqin Lu, Jiming Zhang, Yuxian Huang

PMC · DOI: 10.3389/fimmu.2026.1694659 · Frontiers in Immunology · 2026-02-18

## TL;DR

This study shows that MBD2, an epigenetic protein, reduces HLA-DR expression in monocytes, causing immune paralysis in patients with HBV-related liver failure.

## Contribution

The study identifies MBD2 as a novel epigenetic regulator of immune dysfunction in HBV-ACLF.

## Key findings

- Monocyte MBD2 expression is elevated in HBV-ACLF and correlates with disease severity and poor prognosis.
- MBD2 deficiency increases HLA-DR expression and activates antigen presentation pathways in monocytes.
- MBD2 represses HLA-DR through epigenetic mechanisms, contributing to immune paralysis in HBV-ACLF.

## Abstract

Chronic hepatitis B (CHB) is the leading cause of acute-on-chronic liver failure (ACLF) in China and other Asian countries. A defining immunopathological feature of hepatitis B virus-related ACLF (HBV-ACLF) is immune paralysis, which significantly increases susceptibility to secondary bacterial infections and contributes to poor clinical outcomes. A critical determinant of this immunosuppressed state is impaired antigen presentation due to reduced human leukocyte antigen DR (HLA-DR) expression on monocytes; however, the epigenetic mechanism underlying HLA-DR downregulation in HBV-ACLF remains unclear. Methyl-CpG-binding domain protein 2 (MBD2), an epigenetic reader of DNA methylation, has been implicated in the regulation of monocyte-macrophage function in inflammatory diseases, but its role in HBV-ACLF pathophysiology remains to be fully elucidated. In this study, bulk RNA sequencing (RNA-seq) of circulating monocytes from patients with HBV-ACLF showed a transcriptional profile consistent with immune paralysis, characterized by suppressed antigen presentation and inflammatory pathways, alongside pronounced activation of epigenetic regulatory programs. MBD2 expression was subsequently assessed using immunohistochemistry (IHC), reverse transcription quantitative PCR (RT-qPCR), and flow cytometry. Monocyte MBD2 expression was significantly upregulated in HBV-ACLF and was positively correlated with disease severity (r = 0.2797, P = 0.0182), systemic inflammation indices, and clinical prognosis. To delineate the mechanistic role of MBD2, an MBD2-knockout THP-1 cell model was established and subjected to integrated RNA-seq and assay for transposase-accessible chromatin sequencing (ATAC-seq) following differentiation and lipopolysaccharide (LPS) stimulation. The results showed that MBD2 deficiency significantly increased chromatin accessibility and transcriptional activation of genes involved in antigen presentation and pro-inflammatory responses, including pathways related to major histocompatibility complex (MHC) class II synthesis. Concurrently, enhanced promoter accessibility and activation of transcription factors associated with HLA-II class expression were observed, and increased surface HLA-DR expression was confirmed by flow cytometry. Collectively, these findings suggest that MBD2 epigenetically represses HLA-DR expression in monocytes, leading to impaired antigen presentation and immune paralysis, thereby predisposing patients with HBV-ACLF to secondary bacterial infections. Therefore, MBD2 may serve as a novel biomarker for disease progression and a potential therapeutic target for restoring immunological competence in patients with ACLF.

## Linked entities

- **Genes:** MBD2 (methyl-CpG binding domain protein 2) [NCBI Gene 8932]
- **Proteins:** MBD02 (methyl-CPG-binding domain protein 02)
- **Diseases:** Chronic hepatitis B (MONDO:0005344)

## Full-text entities

- **Genes:** CXCL11 (C-X-C motif chemokine ligand 11) [NCBI Gene 6373] {aka H174, I-TAC, IP-9, IP9, SCYB11, SCYB9B}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, LEF1 (lymphoid enhancer binding factor 1) [NCBI Gene 51176] {aka ECTD1, ECTD17, LEF-1, TCF10, TCF1ALPHA, TCF7L3}, CD14 (CD14 molecule) [NCBI Gene 929], CXCR3 (C-X-C motif chemokine receptor 3) [NCBI Gene 2833] {aka CD182, CD183, CKR-L2, CMKAR3, GPR9, IP10-R}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, HBeAg [NCBI Gene 944568], MERTK (MER proto-oncogene, tyrosine kinase) [NCBI Gene 10461] {aka MER, RP38, Tyro12, c-Eyk, c-mer}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, IL17RA (interleukin 17 receptor A) [NCBI Gene 23765] {aka CANDF5, CD217, CDw217, IL-17RA, IL17R, IMD51}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, LCT (lactase) [NCBI Gene 3938] {aka LAC, LPH, LPH1}, FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, MBD2 (methyl-CpG binding domain protein 2) [NCBI Gene 8932] {aka DMTase, NY-CO-41}, ACOD1 (aconitate decarboxylase 1) [NCBI Gene 730249] {aka CAD, IRG1}, IL27RA (interleukin 27 receptor subunit alpha) [NCBI Gene 9466] {aka CRL1, IL-27RA, IL27R, TCCR, WSX1, zcytor1}, CALCA (calcitonin related polypeptide alpha) [NCBI Gene 796] {aka CALC1, CGRP, CGRP-I, CGRP-alpha, CGRP1, CT}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}, HLA-DPB1 (major histocompatibility complex, class II, DP beta 1) [NCBI Gene 3115] {aka DPB1, HLA-DP, HLA-DP1B, HLA-DPB}, LIPC (lipase C, hepatic type) [NCBI Gene 3990] {aka HDLCQ12, HL, HTGL}, FOSL1 (FOS like 1, AP-1 transcription factor subunit) [NCBI Gene 8061] {aka FRA, FRA1, fra-1}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, HLA-DOB (major histocompatibility complex, class II, DO beta) [NCBI Gene 3112] {aka DOB, HLA_DOB}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, JDP2 (Jun dimerization protein 2) [NCBI Gene 122953] {aka JUNDM2}, MBD1 (methyl-CpG binding domain protein 1) [NCBI Gene 4152] {aka CXXC3, PCM1, RFT}, F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}, SPIB (Spi-B transcription factor) [NCBI Gene 6689] {aka SPI-B}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}
- **Diseases:** infection (MESH:D007239), coagulopathy (MESH:D001778), immunological failure (MESH:D051437), immune dysfunction (MESH:D007154), MF (MESH:C567116), HBV (MESH:D006509), hepatic dysfunction (MESH:D008107), inflammation (MESH:D007249), ascites (MESH:D001201), MBD2 deficiency (MESH:C563602), ACLF (MESH:D065290), End Stage Liver Disease (MESH:D058625), developmental abnormalities (MESH:D006130), immune dysregulation (OMIM:614878), necrosis (MESH:D009336), hepatic hemangioma (MESH:D006391), NC (OMIM:617025), gastrointestinal hemorrhage (MESH:D006471), systemic disorder (MESH:D009422), Infectious Diseases (MESH:D003141), sepsis (MESH:D018805), Bacterial infection (MESH:D001424), monocyte dysfunction (MESH:C565371), hepatic decompensation (MESH:D006333), CHB (MESH:D019694), Immune paralysis (MESH:D010243), hepatocellular injury (MESH:D056486), hepatic failure (MESH:D017093), hepatic encephalopathy (MESH:D006501), systemic (MESH:D015619)
- **Chemicals:** bilirubin (MESH:D001663), lactic acid (MESH:D019344), PMA (MESH:D013755), EDTA (MESH:D004492), Alexa Fluor  488 (MESH:C000711379), streptomycin (MESH:D013307), paraffin (MESH:D010232), A1113802 (-), penicillin (MESH:D010406), puromycin (MESH:D011691), 3,3'-Diaminobenzidine (MESH:D015100), CO2 (MESH:D002245), LPS (MESH:D008070)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Hepatitis B virus (no rank) [taxon 10407]
- **Cell lines:** THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12956542/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956542/full.md

## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956542/full.md

---
Source: https://tomesphere.com/paper/PMC12956542