# Integrated transcriptomic and functional analyses reveal that NOX2 inhibition rewires the inflammatory landscape of macrophages

**Authors:** Iswarya Muthukumarasamy, Sharleen M. Buel, Jennifer M. Hurley, Jonathan S. Dordick

PMC · DOI: 10.3389/fimmu.2026.1731888 · Frontiers in Immunology · 2026-02-18

## TL;DR

This study shows that inhibiting NOX2 in activated macrophages reduces inflammation and promotes tissue repair, offering new insights into anti-inflammatory therapies.

## Contribution

The study reveals that NOX2 inhibition specifically reprograms LPS-stimulated macrophages toward anti-inflammatory states, providing novel mechanistic insight.

## Key findings

- NOX2 inhibition under LPS activation reduces pro-inflammatory cytokines like TNF-α, IL-6, and IL-1β.
- Transcriptomic analysis shows a shift toward anti-inflammatory pathways, including tissue repair and oxidative phosphorylation.
- Functional assays confirm reduced ROS and enhanced anti-inflammatory cytokines like IL-4 and IL-10.

## Abstract

Macrophages are dynamic immune cells whose phenotype and function are shaped by environmental cues, including inflammatory stimuli and oxidative stress. A major source of macrophage-derived reactive oxygen species (ROS) is NADPH Oxidase 2 (NOX2), which is critical for microbial defense but also contributes to redox signaling and inflammatory responses. This increase in NOX2-based ROS can be both beneficial and detrimental, leading to the desire to modulate this key inflammatory pathway pharmacologically. However, while NOX2-driven ROS are well studied in host defense, the underlying macrophage transcriptional reprogramming that leads to inflammatory phenotypes, and the changes that occur to this programming under pharmacological inhibition, remain unclear.

To address this gap, we used the selective small-molecule inhibitor GSK2795039 (GSK) to acutely block NOX2 activity in primary bone marrow–derived macrophages (BMDMs) under basal and lipopolysaccharide (LPS)-stimulated conditions. RNA sequencing and functional assays were performed to uncover the role of inflammation mediation due to NOX2 on transcriptional changes in macrophages.

RNA sequencing revealed that GSK alone induced modest transcriptional changes in resting macrophages, largely restricted to metabolic and stress-associated pathways. In contrast, co-treatment with LPS and GSK markedly reprogrammed the macrophage transcriptome, attenuating classical pro-inflammatory responses while enriching pathways associated with anti-inflammatory activation, tissue repair, extracellular matrix remodeling, and oxidative phosphorylation. Functional assays validated these transcriptomic findings. NOX2 inhibition under LPS activation reduced both intracellular and extracellular ROS, suppressed pro-inflammatory cytokine secretion (TNF-α, IL-6, IL-1β), and enhanced anti-inflammatory cytokines (IL-4, IL-10).

Together, these results demonstrate that NOX2 inhibition does not broadly reprogram macrophages in the resting state but reshapes the inflammatory landscape of LPS-stimulated pro-inflammatory macrophages, shifting them toward a reparative, anti-inflammatory state even in the presence of strong activating stimuli. Our findings provide mechanistic insight into the immunomodulatory potential of NOX2 inhibition in inflammatory models.

## Linked entities

- **Genes:** CYBB (cytochrome b-245 beta chain) [NCBI Gene 1536], TNF (tumor necrosis factor) [NCBI Gene 7124], IL6 (interleukin 6) [NCBI Gene 3569], IL1B (interleukin 1 beta) [NCBI Gene 3553], IL4 (interleukin 4) [NCBI Gene 3565], IL10 (interleukin 10) [NCBI Gene 3586]
- **Chemicals:** GSK2795039 (PubChem CID 71090129)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Fos (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 14281] {aka D12Rfj1, c-fos, cFos}, Lcn2 (lipocalin 2) [NCBI Gene 16819] {aka 24p3, NRL, Sip24}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, Ccl24 (C-C motif chemokine ligand 24) [NCBI Gene 56221] {aka CKb-6, MPIF-2, Scya24}, Retnla (resistin like alpha) [NCBI Gene 57262] {aka 1810019L16Rik, Fizz-1, Fizz1, HIMF, RELM-alpha, RELMa}, Stab1 (stabilin 1) [NCBI Gene 192187] {aka FEEL-1, FELE-1, MFEEL-1, MS-1, STAB-1, mKIAA0246}, Flt1 (FMS-like tyrosine kinase 1) [NCBI Gene 14254] {aka Flt-1, VEGFR-1, VEGFR1, sFlt1}, Klf4 (Kruppel-like transcription factor 4 (gut)) [NCBI Gene 16600] {aka EZF, Gklf, Zie}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Wnt9a (wingless-type MMTV integration site family, member 9A) [NCBI Gene 216795] {aka Wnt14, wnt-14}, Slc7a11 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 11) [NCBI Gene 26570] {aka 9930009M05Rik, sut, xCT}, Olr1 (oxidized low density lipoprotein (lectin-like) receptor 1) [NCBI Gene 108078] {aka LOX-1, SR-EI, Scare1}, Slc7a2 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 2) [NCBI Gene 11988] {aka 20.5, Atrc2, CAT-2, Cat2, Tea}, Ifih1 (interferon induced with helicase C domain 1) [NCBI Gene 71586] {aka 9130009C22Rik, Helicard, Hlcd, MDA5, RLR-2}, Pros1 (protein S (alpha)) [NCBI Gene 19128], Cxcl9 (C-X-C motif chemokine ligand 9) [NCBI Gene 17329] {aka CMK, Mig, MuMIG, Scyb9, crg-10}, Il12a (interleukin 12a) [NCBI Gene 16159] {aka IL-12p35, Il-12a, Ll12a, p35}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, Il13ra2 (interleukin 13 receptor, alpha 2) [NCBI Gene 16165] {aka CD213a2, IL-13R-alpha-2}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Ifit1 (interferon-induced protein with tetratricopeptide repeats 1) [NCBI Gene 15957] {aka GARG-16, IFI-56K, ISG56, Ifi56, P56}, Clec4a2 (C-type lectin domain family 4, member a2) [NCBI Gene 26888] {aka Clec4a, Clecsf6, DCIR, Dcir1}, Ccr3 (C-C motif chemokine receptor 3) [NCBI Gene 12771] {aka CC-CKR3, CKR3, Cmkbr1l2, Cmkbr3}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Ccl17 (C-C motif chemokine ligand 17) [NCBI Gene 20295] {aka Abcd-2, Scya17, Scya17l, Tarc}, Rsad2 (radical S-adenosyl methionine domain containing 2) [NCBI Gene 58185] {aka 2510004L01Rik, SAND, Vig1, cig5}, Igfbp4 (insulin-like growth factor binding protein 4) [NCBI Gene 16010] {aka Deb2, IBP-4, IGFBP-4}, Trib3 (tribbles pseudokinase 3) [NCBI Gene 228775] {aka Ifld2, Nipk, SINK, SKIP3, TRB-3, Trb3}, Igf1 (insulin-like growth factor 1) [NCBI Gene 16000] {aka C730016P09Rik, Igf-1, Igf-I}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, Tmem26 (transmembrane protein 26) [NCBI Gene 327766] {aka 3230401A06}, Cybb (cytochrome b-245, beta polypeptide) [NCBI Gene 13058] {aka CGD91-phox, Cgd, Cyd, Nox2, gp91-1, gp91phox}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16476] {aka AP-1, Junc, c-jun}, Il1a (interleukin 1 alpha) [NCBI Gene 16175] {aka Il-1a}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Slco2b1 (solute carrier organic anion transporter family, member 2b1) [NCBI Gene 101488] {aka OATP-B, OATP2B1, Slc21a9}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Mertk (MER proto-oncogene tyrosine kinase) [NCBI Gene 17289] {aka Eyk, Mer, Nyk, nmf12}, Acvrl1 (activin A receptor, type II-like 1) [NCBI Gene 11482] {aka Acvrlk1, Alk1}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Nlrp2 (NLR family, pyrin domain containing 2) [NCBI Gene 232827] {aka E330007A02Rik, NBS1, Nalp2, PAN1, PYPAF2}, Ccl8 (C-C motif chemokine ligand 8) [NCBI Gene 20307] {aka 1810063B20Rik, HC14, MCP-2, Mcp2, Scya8}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Gpr34 (G protein-coupled receptor 34) [NCBI Gene 23890] {aka Lypsr1}, Mgl2 (macrophage galactose N-acetyl-galactosamine specific lectin 2) [NCBI Gene 216864] {aka CD301b}, CYBB (cytochrome b-245 beta chain) [NCBI Gene 1536] {aka AMCBX2, CGD, CGDX, GP91-1, GP91-PHOX, GP91PHOX}, Abca1 (ATP-binding cassette, sub-family A member 1) [NCBI Gene 11303] {aka ABC-1, Abc1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Stat6 (signal transducer and activator of transcription 6) [NCBI Gene 20852], IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Il13 (interleukin 13) [NCBI Gene 16163] {aka Il-13}, Abcg1 (ATP binding cassette subfamily G member 1) [NCBI Gene 11307] {aka Abc8, White}, Dio2 (deiodinase, iodothyronine, type II) [NCBI Gene 13371] {aka 5DII, DIOII}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}
- **Diseases:** inflammatory cytokine (MESH:D000080424), cervical dislocation (MESH:D002575), chronic (MESH:D002908), inflammation (MESH:D007249), fibrosis (MESH:D005355), cytotoxicity (MESH:D064420), neuroinflammation (MESH:D000090862), infection (MESH:D007239), cardiovascular injury (MESH:D002318), Cancer (MESH:D009369)
- **Chemicals:** lipid (MESH:D008055), DCFDA (MESH:C029569), LPS (MESH:D008070), ATP (MESH:D000255), Luciferin (MESH:D000090562), Amplex Red (MESH:C470430), CO2 (MESH:D002245), DMSO (MESH:D004121), nitric oxide (MESH:D009569), cholesterol (MESH:D002784), ROS (MESH:D017382), heparin (MESH:D006493), glycosaminoglycan (MESH:D006025), GSK (MESH:C000607558), oxygen (MESH:D010100), Amplex (-), superoxide (MESH:D013481), hydrogen peroxide (MESH:D006861), mannose (MESH:D008358), sialic acid (MESH:D019158), fatty acid (MESH:D005227), L-arginine (MESH:D001120), H2DCFDA (MESH:C110400), amino acid (MESH:D000596), NADPH (MESH:D009249)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), C5BL/6 — Homo sapiens (Human), Transformed cell line (CVCL_2637)

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## References

114 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956517/full.md

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Source: https://tomesphere.com/paper/PMC12956517