# Hypoxia-induced drug-resistance bias 3D cancer spheroid drug screens

**Authors:** Tiger Haoran Shi, Yu-Tang Huang, Hyunsu Jeon, Daniel Montes-Pinzon, Peter Mu-Hsin Chang, Nai-Jung Chiang, John Alex Sinclair, Angela Taglione, Donny Hanjaya-Putra, Yichun Wang, Chi-Ying F. Huang, Hsueh-Chia Chang

PMC · DOI: 10.1063/5.0304565 · APL Bioengineering · 2026-03-02

## TL;DR

This study shows that hypoxia in 3D cancer spheroids causes drug resistance, and offers a framework to select effective drugs for all cell types in spheroids.

## Contribution

The study identifies hypoxia-induced quiescence as a key barrier to drug efficacy in 3D spheroids and proposes a method to overcome it.

## Key findings

- Oxygen decay in spheroids causes hypoxia beyond 20 μm from the surface.
- Spheroids larger than 150 μm cannot achieve IC50 for drugs targeting proliferating cells.
- Targeting viability barriers enables effective drug selection for all cell populations in spheroids.

## Abstract

Cellular 3D cancer spheroid technologies are novel tools that facilitate large-scale drug screening to bridge the in vitro–in vivo gap, without the cross-species effects of animal models. However, many spheroid studies fail to achieve 
IC50 (dosage for 50% inhibition) even for unreasonably high applied drug concentrations (up to 1000× 2D 
IC50). By mapping oxygen transport in patient-derived pancreatic cancer spheroids, this limiting viability is attributed to a near-universal oxygen decay gradient that renders cells deeper than 20 μm from the spheroid surface hypoxically quiescent and resistant to many chemotherapeutic drugs. The dose-independent viability barrier prevents 
IC50 from being achieved for spheroids larger than 150 μm in diameter if the applied drug is dependent on the proliferating cell behavior. By examining three cancer cell types and five chemotherapeutic drugs, targeting this limiting viability barrier allows the selection of drugs and adjuvants that are effective in treating all cell populations within a spheroid. The reported analysis provides a framework for the accurate assessment of drug efficacy to target both well-oxygenated proliferating cells and hypoxically quiescent cells in biologically relevant and realistic 3D spheroid systems.

## Linked entities

- **Diseases:** pancreatic cancer (MONDO:0005192)

## Full-text entities

- **Genes:** SP2 (Sp2 transcription factor) [NCBI Gene 6668], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}
- **Diseases:** PDAC (MESH:C537768), pancreatic cancer (MESH:D010190), multi-drug resistance (MESH:D018088), cervical cancer (MESH:D002583), Tumor (MESH:D009369), Hypoxic (MESH:D002534), drug resistance (MESH:D000069279), Hypoxia (MESH:D000860), leukemia (MESH:D007938), toxicity (MESH:D064420), ovarian cancer (MESH:D010051), necrosis (MESH:D009336), hepatocellular carcinoma (MESH:D006528)
- **Chemicals:** AO (MESH:D000165), O2 (MESH:D010100), Alginic acid sodium salt (MESH:D000464), phosphate (MESH:D010710), PI (MESH:D010716), VIN (MESH:D014750), PTX (MESH:D017239), Polymer (MESH:D011108), MET (MESH:D008727), water (MESH:D014867), deuterium oxide (MESH:D017666), Norbornene (MESH:C046060), TOP (MESH:D019772), calcium chloride dihydrate (MESH:D002122), BOBO-3 (MESH:C098829), hyaluronic acid (MESH:D006820), NaOH (MESH:D012972), 008-FluoroSurfactant (-), CIS (MESH:D002945), sodium bicarbonate (MESH:D017693), Propidium Iodide (MESH:D011419), HEPES (MESH:D006531), silicone elastomer (MESH:D012826), DOX (MESH:D004317), HFE7500 (MESH:C472825), L-glutamine (MESH:D005973), Irgacure 2959 (MESH:C499598), agarose (MESH:D012685), paraformaldehyde (MESH:C003043), 1H,1H,2H,2H-Perfluoro-1-decanol (MESH:C033729), Gemcitabine (MESH:D000093542), calcium (MESH:D002118), DMSO (MESH:D004121), glucose (MESH:D005947), Doc (MESH:D000077143)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), HL60 — Homo sapiens (Human), Adult acute myeloid leukemia with maturation, Cancer cell line (CVCL_0002), -4 — Homo sapiens (Human), Ataxia telangiectasia syndrome, Finite cell line (CVCL_F083), 3R-5-1 — Homo sapiens (Human), Embryonic stem cell (CVCL_C950), 3R-4 — Drosophila melanogaster (Fruit fly), Transformed cell line (CVCL_IY72), -5-1 — Mus musculus (Mouse), Mouse lymphoma, Cancer cell line (CVCL_3839), LNCaP — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0395), PANC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0480), W1 — Homo sapiens (Human), Childhood chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0C64), HB-8065 — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_J982), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956372/full.md

## References

64 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956372/full.md

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Source: https://tomesphere.com/paper/PMC12956372