# FUS is an N1- and N6-methyladenosine-binding protein

**Authors:** Xiaochen Liang, Ting Zhao, Xiaoxia Dai, Yuxiang Sun, Jun Yuan, Sanat Afzalpurkar, Connor Duong, Albert Yu, Feng Tang, Xiaomei He, Xiaochuan Liu, Xingyuan Chen, Zhongwen Cao, Yinsheng Wang

PMC · DOI: 10.1093/nar/gkag194 · Nucleic Acids Research · 2026-03-03

## TL;DR

This study shows that the FUS protein binds to specific RNA modifications, which may contribute to neurological diseases like ALS and FTLD.

## Contribution

The discovery that FUS binds to N1- and N6-methyladenosine in RNA provides a novel mechanism for FUS-related neurodegeneration.

## Key findings

- FUS binds to methylated adenosines in CAG repeat RNA, causing cytoplasmic redistribution.
- Reducing m1A and m6A levels decreases FUS-RNA co-localization in cells.
- Binding to methylated RNA makes FUS less mobile in the cytosol.

## Abstract

Nucleotide repeat expansions contribute to a number of neurological disorders. Mutations and augmented expression in fused in sarcoma (FUS) can result in amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Here we reveal that FUS is an N1- and N6-methyladenosine (m1A- and m6A)-binding protein, where the protein interacts with the methylated adenosines in CAG repeat expansion RNA, thereby leading to the protein’s cytoplasmic redistribution in SH-SY5Y cells. We also found that ectopically expressed FUS co-localizes with CAG repeat RNA in the cytosol. This co-localization is diminished upon genetic depletion of m6A and m1A writer proteins (i.e. METTL3 and TRMT61A), pharmacological inhibition of METTL3, and ectopic overexpression of m1A and m6A eraser proteins (i.e. ALKBH3 and FTO). Moreover, binding to methylated CAG repeat RNA renders the ectopically expressed FUS protein less dynamic in cells. Together, our study underscores a critical role for m1A and m6A in enhancing FUS–RNA interaction, which results in aberrant subcellular distribution and attenuated mobility of the protein in cells. These findings unveil a novel mechanism underlying neurodegenerative disorders emanating from elevated expression of FUS and suggest targeting FUS-methylated adenosine interactions as a potential therapeutic strategy for FUS proteinopathy.

Graphical Abstract

## Linked entities

- **Genes:** FUS (FUS RNA binding protein) [NCBI Gene 2521], METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], TRMT61A (tRNA methyltransferase 61A) [NCBI Gene 115708], ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 221120], FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068]
- **Proteins:** FUS (FUS RNA binding protein), METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit), TRMT61A (tRNA methyltransferase 61A), ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase), FTO (FTO alpha-ketoglutarate dependent dioxygenase)
- **Diseases:** amyotrophic lateral sclerosis (MONDO:0004976)

## Full-text entities

- **Genes:** TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, MBP (myelin basic protein) [NCBI Gene 4155], FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 221120] {aka ABH3, DEPC-1, DEPC1, PCA1, hABH3}, HTT (huntingtin) [NCBI Gene 3064] {aka HD, IT15, LOMARS}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, PNKP (polynucleotide kinase 3'-phosphatase) [NCBI Gene 11284] {aka AOA4, CMT2B2, EIEE10, MCSZ, PNK}, TBP (TATA-box binding protein) [NCBI Gene 6908] {aka GTF2D, GTF2D1, HDL4, SCA17, TBP1, TFIID}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, ATXN2 (ataxin 2) [NCBI Gene 6311] {aka ATX2, SCA2, TNRC13}, NEB (nebulin) [NCBI Gene 4703] {aka AMC6, NEB177D, NEM2}, TRMT61A (tRNA methyltransferase 61A) [NCBI Gene 115708] {aka C14orf172, GCD14, Gcd14p, TRM61, hTRM61}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}
- **Diseases:** neurological diseases (MESH:D020271), neuron degeneration (MESH:D009410), CAG repeat (MESH:D000083102), neurological disorders (MESH:D009461), ALS (MESH:D000690), neurodegeneration (MESH:D019636), intellectual disability (MESH:D008607), TLS (MESH:D008080), HD (MESH:D006816), spinocerebellar ataxia (MESH:D020754), FTLD (MESH:D057174), neurotoxic (MESH:D020258)
- **Chemicals:** CO2 (MESH:D002245), rA (MESH:D011883), ATP (MESH:D000255), H2O (MESH:D014867), m6A (MESH:C005955), nucleosides (MESH:D009705), agarose (MESH:D012685), chloroform (MESH:D002725), peptide (MESH:D010455), SDS (MESH:D012967), isoamyl alcohol (MESH:C029683), acetic acid (MESH:D019342), HCl (MESH:D006851), H (MESH:D006859), KCl (MESH:D011189), DTT (MESH:D004229), ribose (MESH:D012266), 4',6-diamidino-2-phenylindole (MESH:C007293), DMSO (MESH:D004121), methanol (MESH:D000432), NaCl (MESH:D012965), sodium deoxycholate (MESH:D003840), (CAG (-), adenosine (MESH:D000241), glycerol (MESH:D005990), puromycin (MESH:D011691), penicillin (MESH:D010406), formamide (MESH:C031066), Formic acid (MESH:C030544), sodium citrate (MESH:D000077559), EDTA (MESH:D004492), ZnCl2 (MESH:C016837), His (MESH:D006639), amino acids (MESH:D000596), nitrogen (MESH:D009584), IGEPAL CA-630 (MESH:C010615), N1-methyladenosine (MESH:C002230), phenylmethylsulfonyl fluoride (MESH:D010664), streptomycin (MESH:D013307), Alexa Fluor 488 (MESH:C000711379), polyacrylamide (MESH:C016679), acetonitrile (MESH:C032159)
- **Species:** Mycoplasma (genus) [taxon 2093], Drosophila melanogaster (fruit fly, species) [taxon 7227], Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** D395A, D181A, 858A-T
- **Cell lines:** Rosetta (DE3 — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12956363/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956363/full.md

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Source: https://tomesphere.com/paper/PMC12956363