# Glycine max Jumonji C domain-containing proteins JMJ19/20 exhibit endopeptidase activity and interact with LUXs to mediate flowering time

**Authors:** Yapeng Han, Qian Jia, Mengshi Liu, Yuan Fang, Tianqi Shen, Shiru Tan, Qianya Gao, Jing Liu, Chenjiang You, Yingxiang Wang

PMC · DOI: 10.1093/nar/gkag134 · Nucleic Acids Research · 2026-02-27

## TL;DR

This study explores how two soybean proteins, GmJMJ19 and GmJMJ20, influence flowering time by acting as endopeptidases and interacting with another protein called LUX.

## Contribution

The novel finding is that GmJMJ19/20 function as endopeptidases rather than histone demethylases and influence flowering time through a non-canonical pathway.

## Key findings

- GmJMJ19/20 cleave histone H3 peptides at unmethylated lysine 27 residues without requiring Fe²⁺ or α-ketoglutarate.
- Knockout of GmJMJ19/20 significantly delays flowering time in soybean.
- GmJMJ19/20 interact with GmLUX2 and enhance GmFULc expression independently of the canonical evening complex.

## Abstract

Histone demethylases serve essential functions in plant growth and development across various species. However, their roles in Glycine max remain largely unexplored. This study identified GmJMJ19 and GmJMJ20, encoding JmjC domain-containing proteins. They exhibit circadian rhythmic expression patterns and interact with LUX ARRHYTHMO 2 (GmLUX2) both in vitro and in vivo. Although GmJMJ19/20 bind to histones, they lack conventional histone demethylase activity. Rather, GmJMJ19/20 function as endopeptidases that specifically cleave histone H3 peptides at unmethylated lysine 27 residues, in a manner independent of Fe²⁺ and α-ketoglutarate, the cofactors required for typical JmjC enzymes. Structural modeling supports the occlusion of the catalytic pocket that prevents access to methylated substrates. The simultaneous knockout of GmJMJ19/20 significantly delays flowering time. Comparative transcriptomic analyses reveal that the GmJM19/20-GmLUX2 module enhances GmFULc expression via independent of the canonical evening complex. Haplotype analysis suggests that GmJMJ19 underwent selection during domestication, potentially contributing to soybean geographical adaptation.

Graphical Abstract

## Linked entities

- **Genes:** FULC (MADS-box protein FULc) [NCBI Gene 100798351]
- **Species:** Glycine max (taxon 3847)

## Full-text entities

- **Genes:** MBD2 (methyl-CpG binding domain protein 2) [NCBI Gene 8932] {aka DMTase, NY-CO-41}, ATXR2 (histone-lysine N-methyltransferase ATXR2) [NCBI Gene 821736] {aka SDG36, SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2}, HHT2 (histone H3) [NCBI Gene 855700], Histone H4 [NCBI Gene 100777359], FT2A (protein FLOWERING LOCUS T) [NCBI Gene 100814951] {aka E9, FT, FT3, FTL3, GmFT2a}, histone H3 [NCBI Gene 100785082], E1LB (B3 domain-containing protein E1Lb) [NCBI Gene 102670334], FT5A (protein FLOWERING LOCUS T) [NCBI Gene 100796994] {aka FTL4, GmFT5a}, E1LA (B3 domain-containing protein E1La) [NCBI Gene 102667341], KDM8 (lysine demethylase 8) [NCBI Gene 79831] {aka JMJD5}, INO80 (DNA helicase INO80-like protein) [NCBI Gene 824897] {aka ATINO80, INO80 ORTHOLOG, INO80 ortholog}, H3C14 (H3 clustered histone 14) [NCBI Gene 788077]
- **Diseases:** CUT&amp;tag (MESH:C566904), BD (MESH:D001528), AD (MESH:D000544), SD (MESH:D012735)
- **Chemicals:** KCl (MESH:D011189), lysine (MESH:D008239), formaldehyde (MESH:D005557), mannitol (MESH:D008353), SYBR Green (MESH:C098022), sucrose (MESH:D013395), chloroform (MESH:D002725), urea (MESH:D014508), oil (MESH:D009821), NRBT (-), alpha-KG (MESH:D007656), GST (MESH:C059555), HEPES (MESH:D006531), glycerol (MESH:D005990), DTT (MESH:D004229), adenine (MESH:D000225), ascorbate (MESH:D001205), SDS (MESH:D012967), glycine (MESH:D005998), phenol (MESH:D019800), Fe (MESH:D007501), peptides (MESH:D010455), Ni (MESH:D009532), Nonidet P-40 (MESH:C010615), nitrogen (MESH:D009584), EDTA (MESH:D004492), His (MESH:D006639), Triton X-100 (MESH:D017830), IP (MESH:C041508), polyacrylamide (MESH:C016679), FAM (MESH:C031179), metal (MESH:D008670), MgCl2 (MESH:D015636), NaCl (MESH:D012965), NTA (MESH:D009571), salt (MESH:D012492)
- **Species:** Agrobacterium tumefaciens (species) [taxon 358], Glycine soja (wild soybean, species) [taxon 3848], Nicotiana benthamiana (species) [taxon 4100], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Cauliflower mosaic virus (no rank) [taxon 10641], Homo sapiens (human, species) [taxon 9606], Solanum lycopersicum (tomato, species) [taxon 4081], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Nicotiana tabacum (American tobacco, species) [taxon 4097], Caenorhabditis elegans (species) [taxon 6239], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Glycine max (soybean, species) [taxon 3847], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** H389A, D312, K325, D312A, H310A, K325A, H310, S318T, H389
- **Cell lines:** 35S — Homo sapiens (Human), Colorectal adenoma, Cancer cell line (CVCL_8754), Rosetta2 (DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), -28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94)

## Full text

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## Figures

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## References

83 references — full list in the complete paper: https://tomesphere.com/paper/PMC12956348/full.md

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Source: https://tomesphere.com/paper/PMC12956348