# Protocol for the generation of a human-derived nasal epithelial model and induction of tissue-resident memory-like T cells in a co-culture system

**Authors:** Lisa A. King, Iris van der Valk, Jasmijn S. Schrumpf, Youvika Singh, Geert H. Groeneveld, Pieter S. Hiemstra, Anne M. van der Does, Simon P. Jochems, Wesley Huisman

PMC · DOI: 10.1016/j.xpro.2026.104401 · STAR Protocols · 2026-02-26

## TL;DR

This paper provides a detailed protocol for creating a 3D nasal epithelial model and generating tissue-resident memory-like T cells in a lab setting.

## Contribution

The novel contribution is a reproducible in vitro method to induce and study human TRM-like T cells using nasal epithelial co-cultures.

## Key findings

- A 3D nasal epithelial model can be generated for co-culture experiments.
- TRM-like T cells can be induced via co-culture with autologous immune cells.
- Flow cytometry and RNA sequencing can effectively analyze TRM-like T cell characteristics.

## Abstract

Tissue-resident memory T cells (TRMs) are a distinct subset of T lymphocytes that permanently localize in non-lymphoid tissues and mediate rapid, localized immune responses. Here, we present a protocol to study human TRMs using an in vitro model system that induces TRM-like T cells. We describe steps for generating the 3D nasal epithelial model and inducing TRMs via co-culture with autologous immune cells. We then detail procedures to analyze TRMs using flow cytometry, single-cell RNA sequencing, and cytokine release.

•Instructions for generating a 3D nasal epithelial model•Steps to induce tissue-resident memory-like T cells•Guidance on analyzing tissue-resident memory-like T cells

Instructions for generating a 3D nasal epithelial model

Steps to induce tissue-resident memory-like T cells

Guidance on analyzing tissue-resident memory-like T cells

Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.

Tissue-resident memory T cells (TRMs) are a distinct subset of T lymphocytes that permanently localize in non-lymphoid tissues and mediate rapid, localized immune responses. Here, we present a protocol to study human TRMs using an in vitro model system that induces TRM-like T cells. We describe steps for generating the 3D nasal epithelial model and inducing TRMs via co-culture with autologous immune cells. We then detail procedures to analyze TRMs using flow cytometry, single-cell RNA sequencing, and cytokine release.

## Full-text entities

- **Genes:** CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, GEM (GTP binding protein overexpressed in skeletal muscle) [NCBI Gene 2669] {aka KIR}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, NOG (noggin) [NCBI Gene 9241] {aka SYM1, SYNS1, SYNS1A}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, MUC5AC (mucin 5AC, oligomeric mucus/gel-forming) [NCBI Gene 4586] {aka MUC5, TBM, leB, mucin}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, FGF10 (fibroblast growth factor 10) [NCBI Gene 2255] {aka LADD3}, ITGAE (integrin subunit alpha E) [NCBI Gene 3682] {aka CD103, HUMINAE}, FGF7 (fibroblast growth factor 7) [NCBI Gene 2252] {aka HBGF-7, KGF}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, SCGB1A1 (secretoglobin family 1A member 1) [NCBI Gene 7356] {aka CC10, CC16, CCPBP, CCSP, UGB, UP-1}
- **Diseases:** TRMs (MESH:D008569), respiratory infections (MESH:D012141)
- **Chemicals:** oil (MESH:D009821), A83-01 (MESH:C507011), SB202190 (MESH:C090942), ionomycin (MESH:D015759), HEPES (MESH:D006531), Y-27632 (MESH:C108830), BME-2 (-), aluminum (MESH:D000535), formalin (MESH:D005557), DAPI (MESH:C007293), DMSO (MESH:D004121), sodium heparin (MESH:D006493), N-acetylcysteine (MESH:D000111), NEM (MESH:C058866), PBS (MESH:D007854), CO2 (MESH:D002245), Vaseline (MESH:D010577), C (MESH:D002244), Triton-X100 (MESH:D017830), EDTA (MESH:D004492), nitrogen (MESH:D009584), PMA (MESH:D013755), Ficoll (MESH:D005362), trypan blue (MESH:D014343), T (MESH:D014316), Brefeldin A (MESH:D020126), ethanol (MESH:D000431), GlutaMAX (MESH:C054122), Nicotinamide (MESH:D009536), water (MESH:D014867)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** BME-2 — Homo sapiens (Human), Finite cell line (CVCL_WB25)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12955643/full.md

## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12955643/full.md

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Source: https://tomesphere.com/paper/PMC12955643