# Role and progression of bile acid metabolism in mediating Th17/Treg homeostasis in inflammatory bowel disease

**Authors:** Simei Yue, Yulin Tan, Lingjiao Gong, Fei Liao

PMC · DOI: 10.1016/j.isci.2026.114961 · iScience · 2026-02-09

## TL;DR

This review explores how bile acid metabolism influences immune balance in inflammatory bowel disease, offering insights for future research.

## Contribution

The paper synthesizes recent findings on bile acid metabolites' role in immune regulation in IBD, highlighting their potential therapeutic relevance.

## Key findings

- IBD patients show altered intestinal metabolite profiles compared to healthy individuals.
- Microbiota-derived bile acid metabolites are significantly reduced in IBD, affecting gut immunity.
- Bile acid metabolism is linked to immune balance and disease progression in IBD.

## Abstract

Inflammatory bowel disease (IBD) is characterized by an aberrant immune response that results in intestinal inflammation and tissue damage, which manifest clinically as recurrent abdominal pain and diarrhea. As a chronic condition with limited curative options, the incidence of IBD has markedly increasing globally, imposing a considerable socioeconomic burden and leading to significant losses in workforce productivity. Recent research has indicated that the intestinal metabolite profile of patients with IBD is substantially altered compared to that of healthy individuals. Notably, a significant reduction was observed in the levels of microbiota-derived bile acid metabolites that are essential for gut immunity, indicating a potential association between bile acid metabolism and IBD progression. In this review, we aim to synthesize the role and recent research advancements regarding bile acid metabolites in mediating immune balance in IBD, thereby providing theoretical support for future investigations.

Health sciences; Medicine; Medical specialty; Proctology

## Linked entities

- **Diseases:** inflammatory bowel disease (MONDO:0005265)

## Full-text entities

- **Genes:** Cyp3a11 (cytochrome P450, family 3, subfamily a, polypeptide 11) [NCBI Gene 13112] {aka Cyp3a, IIIAm1, Pcn}, Mcpt1 (mast cell protease 1) [NCBI Gene 17224] {aka Mcp-1}, Rela (Rela proto-oncogene, NFKB subunit) [NCBI Gene 19697] {aka p65, p65 NF-kappa B, p65 NFkB}, MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, RXRA (retinoid X receptor alpha) [NCBI Gene 6256] {aka NR2B1, RXR-alpha, RXRalpha}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, Gast (gastrin) [NCBI Gene 14459] {aka GAS}, Fgf15 (fibroblast growth factor 15) [NCBI Gene 14170] {aka FGF19, Fgf8a}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}, Abcb11 (ATP-binding cassette, sub-family B member 11) [NCBI Gene 27413] {aka ABC16, Bsep, Lith1, PFIC2, PGY4, SPGP}, Nr1i2 (nuclear receptor subfamily 1, group I, member 2) [NCBI Gene 18171] {aka PXR, PXR.1, PXR.2, PXR1, SXR, mPXR}, Gpbar1 (G protein-coupled bile acid receptor 1) [NCBI Gene 227289] {aka BG37, GPCR, GPR131, M-BAR, TGR5}, CYP51A1 (cytochrome P450 family 51 subfamily A member 1) [NCBI Gene 1595] {aka CP51, CYP51, CYPL1, LDM, P450-14DM, P450L1}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, GPBAR1 (G protein-coupled bile acid receptor 1) [NCBI Gene 151306] {aka BG37, GPCR19, GPR131, M-BAR, TGR5}, CLDN1 (claudin 1) [NCBI Gene 9076] {aka CLD1, ILVASC, SEMP1}, Ddit3 (DNA-damage inducible transcript 3) [NCBI Gene 13198] {aka AltDDIT3, CHOP-10, CHOP10, chop, gadd153}, Slc10a2 (solute carrier family 10, member 2) [NCBI Gene 20494] {aka 9130221J18Rik, ASBT, IBAT, ISBT}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, Nr0b2 (nuclear receptor subfamily 0, group B, member 2) [NCBI Gene 23957] {aka SHP, SHP-1, Shp1}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, ERN1 (endoplasmic reticulum to nucleus signaling 1) [NCBI Gene 2081] {aka IRE1, IRE1P, IRE1a, hIRE1p}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, IL23A (interleukin 23 subunit alpha) [NCBI Gene 51561] {aka IL-23, IL-23A, IL23P19, P19, SGRF}, CYP27A1 (cytochrome P450 family 27 subfamily A member 1) [NCBI Gene 1593] {aka CP27, CTX, CYP27}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, NR1H4 (nuclear receptor subfamily 1 group H member 4) [NCBI Gene 9971] {aka BAR, FXR, HRR-1, HRR1, PFIC5, RIP14}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Nr1h4 (nuclear receptor subfamily 1, group H, member 4) [NCBI Gene 20186] {aka Fxr, HRR1, RIP14, Rxrip14}, Xbp1 (X-box binding protein 1) [NCBI Gene 22433] {aka D11Ertd39e, TREB-5, TREB5, XBP-1}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Fgfr4 (fibroblast growth factor receptor 4) [NCBI Gene 14186] {aka Fgfr-4}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, Nfkbia (nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha) [NCBI Gene 18035] {aka Nfkbi}, B3galt5 (UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5) [NCBI Gene 93961] {aka 1190002B21Rik, b3Galt-V}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, NCOR1 (nuclear receptor corepressor 1) [NCBI Gene 9611] {aka N-CoR, N-CoR1, PPP1R109, TRAC1, hN-CoR}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, GPR166P (G protein-coupled receptor 166, pseudogene) [NCBI Gene 442206] {aka GPCR, PGR9}, VDR (vitamin D receptor) [NCBI Gene 7421] {aka NR1I1, PPP1R163}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, CYP7A1 (cytochrome P450 family 7 subfamily A member 1) [NCBI Gene 1581] {aka CP7A, CYP7, CYPVII}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Cyp7a1 (cytochrome P450, family 7, subfamily a, polypeptide 1) [NCBI Gene 13122] {aka CYPVII, CYPVIIc}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, CYP7B1 (cytochrome P450 family 7 subfamily B member 1) [NCBI Gene 9420] {aka CBAS3, CP7B, SPG5A}, Hnf4a (hepatic nuclear factor 4, alpha) [NCBI Gene 15378] {aka HNF-4, Hnf4, Hnf4alpha, MODY1, Nr2a1, TCF-14}, NR1I2 (nuclear receptor subfamily 1 group I member 2) [NCBI Gene 8856] {aka BXR, ONR1, PAR, PAR1, PAR2, PARq}
- **Diseases:** UC (MESH:D003093), chronic (MESH:D002908), primary biliary cholangitis (MESH:D008105), hepatocellular carcinoma (MESH:D006528), liver injury (MESH:D017093), IBD (MESH:D015212), familial adenomatous polyposis (MESH:D011125), weight loss (MESH:D015431), toxicity (MESH:D064420), CD (MESH:D003424), immune disorders (MESH:D007154), colitis (MESH:D003092), CRC (MESH:D015179), Clostridioides difficile infection (MESH:D003015), diarrheal symptoms (MESH:D004403), epithelial dysfunction (MESH:D009375), pruritus (MESH:D011537), ERS (OMIM:204690), inflammatory and metabolic diseases (MESH:D008659), diarrhea (MESH:D003967), vitamin D deficiency (MESH:D014808), tumorigenesis (MESH:D063646), immune-mediated (MESH:C567355), steatohepatitis (MESH:D005234), non-alcoholic steatohepatitis (MESH:D005235), obesity (MESH:D009765), abdominal pain (MESH:D015746), asthma (MESH:D001249), dysbiosis (MESH:D064806), cancer (MESH:D009369), dyslipidemia (MESH:D050171), mitochondrial dysfunction (MESH:D028361), chronic inflammation (MESH:D007249), cholestatic liver diseases (MESH:D008107), metabolic syndrome (MESH:D024821)
- **Chemicals:** glucose (MESH:D005947), SCFA (MESH:D005232), tryptophan (MESH:D014364), lipids (MESH:D008055), INT-747 (MESH:C464660), sterol (MESH:D013261), taurine (MESH:D013654), Dextran sulfate sodium (MESH:D016264), steroid (MESH:D013256), UDCA (MESH:D014580), CDCA (MESH:D002635), LCA (MESH:D008095), butyrate (MESH:D002087), amino acids (MESH:D000596), vitamin D3 (MESH:D002762), INT-777 (MESH:C545501), BA receptor agonists (-), BA (MESH:D001647), cilofexor (MESH:C000717094), Cholesterol (MESH:D002784), glycine (MESH:D005998), oxysterols (MESH:D000072376), inulin (MESH:D007444), tributyl citrate (MESH:C039783), tropifexor (MESH:C000630573), sodium taurocholate (MESH:D013656), CA (MESH:D019826), carboxylic acid (MESH:D002264), 3-oxo-lithocholic acid (MESH:C046230), AOM (MESH:D001397), fat (MESH:D005223), DCA (MESH:D003840), Vitamin D (MESH:D014807)
- **Species:** gut metagenome (species) [taxon 749906], Aspergillus (genus) [taxon 5052], Clostridium sporogenes (species) [taxon 1509], Ehrlichia (genus) [taxon 943], Clostridioides difficile (species) [taxon 1496], Homo sapiens (human, species) [taxon 9606], Bacillus pumilus (species) [taxon 1408], Bacteroides fragilis (species) [taxon 817], Escherichia coli Nissle 1917 (strain) [taxon 316435], Odoribacter (genus) [taxon 283168], [Clostridium] scindens (species) [taxon 29347], Gordonibacter pamelaeae (species) [taxon 471189], Eggerthella lenta (species) [taxon 84112], Bifidobacterium adolescentis (species) [taxon 1680], Mediterraneibacter gnavus (species) [taxon 33038], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Faecalibacterium (genus) [taxon 216851]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12955578/full.md

## References

122 references — full list in the complete paper: https://tomesphere.com/paper/PMC12955578/full.md

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Source: https://tomesphere.com/paper/PMC12955578