# The segmented flavivirus ALSV-encoded nucleoprotein VP2 inhibits type I interferon production by targeting RIG-I

**Authors:** Mingming Pan, Zhixia Song, Mengmeng Wang, Mengru Zhao, Shu Fang, Fangyu Jin, Qianqian Tan, Wenbo Xu, Lihe Che, Nan Liu, Liyan Sui, Quan Liu, Zhijun Hou, Yinghua Zhao

PMC · DOI: 10.1128/spectrum.02484-25 · Microbiology Spectrum · 2026-01-28

## TL;DR

This study reveals how the Alongshan virus evades the immune system by using its VP2 protein to block the production of interferon, a key antiviral defense.

## Contribution

The study identifies VP2 as a novel viral protein that inhibits RIG-I-mediated interferon production through autophagy-dependent degradation.

## Key findings

- ALSV infection suppresses host IFN-I production triggered by poly(I:C).
- VP2 interacts with and degrades RIG-I via autophagy, impairing innate immune signaling.
- ALSV uses multiple proteins to selectively target RIG-I and MDA5 pathways for immune evasion.

## Abstract

The Alongshan virus (ALSV), a newly identified tick-borne segmented flavivirus, can infect humans and cause Alongshan fever, making it imperative to understand its pathogenic mechanisms for the development of effective intervention strategies. Our previous research has established that ALSV exhibits sensitivity to interferon-beta (IFN-β) while having evolved the ability to antagonize downstream antiviral responses induced by type I IFN (IFN-I); however, the specific effects and underlying mechanisms by which ALSV modulates IFN-I production remain poorly understood. In the present study, we demonstrated that ALSV infection significantly suppresses host IFN-I production triggered by poly(I:C), a synthetic analog of viral double-stranded RNA that activates innate immune pathways. To unravel the molecular basis of this suppression, we systematically evaluated the impact of individual ALSV viral proteins on Toll-like receptor-mediated IFN-I production, revealing a complex regulatory network wherein distinct viral proteins target specific signaling molecules: specifically, VP2 and VP3 were found to be responsible for inhibiting RIG-I-mediated IFN-I production, while NSP2 and VP1b were identified as key inhibitors of MDA5-mediated IFN-I production, highlighting the virus’s strategy of employing multiple proteins to disrupt innate immune signaling. Focusing further on the viral nucleoprotein VP2, we determined that it acts at the upstream signaling level of TANK-binding kinase 1, a critical kinase in the IFN-I signaling cascade. Mechanistically, VP2 directly interacts with RIG-I and mediates its degradation through an autophagy-dependent pathway, thereby impairing the host’s ability to detect viral RNA and initiate IFN-I production. These findings not only expand our understanding of the immune evasion mechanisms employed by novel segmented flaviviruses but also offer valuable insights that could facilitate the development of new preventive and therapeutic strategies for the ALSV infection.

Alongshan virus (ALSV) is an emerging segmented flavivirus that poses a growing threat to human and animal health across Eurasia. Despite its demonstrated capacity to infect humans and suppress interferon (IFN)-mediated antiviral responses, the precise mechanisms of ALSV immune evasion remain largely undefined. This study identifies the viral nucleoprotein VP2 as a key antagonist of host type I IFN (IFN-I) production. By directly interacting with and promoting the autophagy-mediated degradation of RIG-I, VP2 effectively disrupts innate immune recognition and signaling. This finding not only elucidates a previously unknown mechanism of immune suppression by ALSV but also highlights the virus’s sophisticated strategy of using multiple proteins to selectively target RIG-I and MDA5 pathways. These insights advance our understanding of segmented flavivirus-host interactions and suggest that restoring RIG-I function may be a promising therapeutic strategy against ALSV infection.

## Linked entities

- **Proteins:** RIGI (RNA sensor RIG-I), VP2 (vacuolar H+-pyrophosphatase 2), VP3 (structural protein), RTN2 (reticulon 2), LOC542788 (B3 domain-containing protein VP1), IFIH1 (interferon induced with helicase C domain 1)
- **Chemicals:** poly(I:C) (PubChem CID 135618150)

## Full-text entities

- **Genes:** IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}
- **Diseases:** ALSV infection (MESH:D014777), Alongshan fever (MESH:D005334)
- **Chemicals:** poly(I:C) (MESH:D011070)
- **Species:** Homo sapiens (human, species) [taxon 9606], flavivirus [taxon 11051], Alongshan virus (species) [taxon 2269360]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12955381/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12955381/full.md

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Source: https://tomesphere.com/paper/PMC12955381