# Epigenetic mechanisms and steroid-resistant nephrotic syndrome: The future potential for SRNS diagnosis

**Authors:** Yiying Zhu, Yinfeng Wang, Cuello Garcia Haider, Changling Cao, Ouzaouit Abdelhak, Yutong Fu, Huiqiang Huang, Tingya Jiang, Yang Zhou, Xiaoge Zhang, Yu Wu

PMC · DOI: 10.1016/j.isci.2026.114973 · iScience · 2026-02-10

## TL;DR

This paper explores how epigenetic changes could help predict which patients will not respond to steroid treatment for nephrotic syndrome.

## Contribution

The paper proposes a new multi-biomarker strategy combining methylation, miRNA, and histone data for predicting steroid resistance.

## Key findings

- Differential DNA methylation in genes like NLRP3 and SOCS3 is linked to steroid responsiveness.
- MicroRNAs such as miR-142 and miR-30 are associated with glucocorticoid treatment efficacy.
- An integrative analysis of epigenetic markers may improve pre-treatment risk stratification for SRNS.

## Abstract

Nephrotic syndrome (NS) is commonly managed with glucocorticoid (GC) therapy, yet about 10%–30% of children do not achieve remission after an adequate initial steroid course and are classified as steroid-resistant nephrotic syndrome (SRNS); in adults, proportions are generally higher and heterogeneous across histologies. Currently, genetic testing can identify causative mutations in 30% of SRNS cases, highlighting the need for complementary pre-treatment stratification approaches. This review synthesizes human evidence linking epigenetic dysregulation to GC responsiveness, highlighting differential DNA methylation patterns in genes such as NLRP3 and SOCS3. Simultaneously, the expression levels of microRNAs (miRNAs) such as miR-142 and miR-30 have been shown to be associated with the efficacy of GC treatment. We propose a multi-biomarker integrative analysis strategy that combines methylation profiles with miRNA expression and emerging histone modification signals for pre-treatment risk stratification and prediction of therapeutic response, thereby reducing ineffective steroid exposure and enabling mechanism-informed management pending prospective validation.

Nephrology; Molecular biology; Epigenetics

## Linked entities

- **Genes:** NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548], SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021]
- **Diseases:** nephrotic syndrome (MONDO:0005377), steroid-resistant nephrotic syndrome (MONDO:0044765)

## Full-text entities

- **Genes:** WT1 (WT1 transcription factor) [NCBI Gene 7490] {aka AWT1, GUD, NPHS4, WAGR, WIT-2, WT-1}, TSC22D3 (TSC22 domain family member 3) [NCBI Gene 1831] {aka DIP, DSIPI, GILZ, TSC-22R}, CTSZ (cathepsin Z) [NCBI Gene 1522] {aka CTSX}, PCDH17 (protocadherin 17) [NCBI Gene 27253] {aka PCDH68, PCH68}, FLRT2 (fibronectin leucine rich transmembrane protein 2) [NCBI Gene 23768], NPHS2 (NPHS2 stomatin family member, podocin) [NCBI Gene 7827] {aka PDCN, SRN1}, TMEM196 (transmembrane protein 196) [NCBI Gene 256130], CTNND2 (catenin delta 2) [NCBI Gene 1501] {aka GT24, NPRAP}, CD2AP (CD2 associated protein) [NCBI Gene 23607] {aka CMS}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, PCDH8 (protocadherin 8) [NCBI Gene 5100] {aka ARCADLIN, PAPC}, TRPC6 (transient receptor potential cation channel subfamily C member 6) [NCBI Gene 7225] {aka FSGS2, TRP6}, TBX2 (T-box transcription factor 2) [NCBI Gene 6909] {aka VETD}, NPHS1 (NPHS1 adhesion molecule, nephrin) [NCBI Gene 4868] {aka CNF, NPHN, nephrin}, SHOX2 (SHOX homeobox 2) [NCBI Gene 6474] {aka OG12, OG12X, SHOT}, AIM2 (absent in melanoma 2) [NCBI Gene 9447] {aka PYHIN4}, ZNF677 (zinc finger protein 677) [NCBI Gene 342926], MECP2 (methyl-CpG binding protein 2) [NCBI Gene 4204] {aka AUTSX3, MRX16, MRX79, MRXS13, MRXSL, PPMX}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, MIR124-3 (microRNA 124-3) [NCBI Gene 406909] {aka MIRN124-3, MIRN124A3, mir-124-3}, L1RE1 [NCBI Gene 4029], DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, NR3C1 (nuclear receptor subfamily 3 group C member 1) [NCBI Gene 2908] {aka GCCR, GCR, GCRST, GR, GRL}, PENK (proenkephalin) [NCBI Gene 5179] {aka PE, PENK-A}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, CCL20 (C-C motif chemokine ligand 20) [NCBI Gene 6364] {aka CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, NDRG4 (NDRG family member 4) [NCBI Gene 65009] {aka BDM1, SMAP-8, SMAP8}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, TFAP2B (transcription factor AP-2 beta) [NCBI Gene 7021] {aka AP-2B, AP-2beta, AP2-B, PDA2}, MAFB (MAF bZIP transcription factor B) [NCBI Gene 9935] {aka DURS3, KRML, MCTO}, H4C6 (H4 clustered histone 6) [NCBI Gene 8361] {aka H4, H4/c, H4FC, HIST1H4F}, PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, ACTN4 (actinin alpha 4) [NCBI Gene 81] {aka ACTININ-4, FSGS, FSGS1}, NLRP1 (NLR family pyrin domain containing 1) [NCBI Gene 22861] {aka AIADK, CARD7, CIDED, CLR17.1, DEFCAP, DEFCAP-L/S}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, SEPTIN9 (septin 9) [NCBI Gene 10801] {aka AF17q25, MSF, MSF1, PNUTL4, SEPT9, SINT1}, MIR186 (microRNA 186) [NCBI Gene 406962] {aka MIRN186, miR-186}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, CISH (cytokine inducible SH2 containing protein) [NCBI Gene 1154] {aka BACTS2, CIS, CIS-1, G18, SOCS}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, FKBP4 (FKBP prolyl isomerase 4) [NCBI Gene 2288] {aka FKBP51, FKBP52, FKBP59, HBI, Hsp56, PPIase}, RASSF1 (Ras association domain family member 1) [NCBI Gene 11186] {aka 123F2, NORE2A, RASSF1A, RDA32, REH3P21}, POU4F2 (POU class 4 homeobox 2) [NCBI Gene 5458] {aka BRN3.2, BRN3B, Brn-3b}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, ZNF154 (zinc finger protein 154) [NCBI Gene 7710] {aka pHZ-92}, BMP3 (bone morphogenetic protein 3) [NCBI Gene 651] {aka BMP-3A}, INF2 (inverted formin 2) [NCBI Gene 64423] {aka C14orf151, C14orf173, CMTDIE, FSGS5, pp9484}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, H2AC18 (H2A clustered histone 18) [NCBI Gene 8337] {aka H2A, H2A.2, H2A/O, H2A/q, H2AFO, H2a-615}, MIR142 (microRNA 142) [NCBI Gene 406934] {aka MIRN142, mir-142}, FHIT (fragile histidine triad diadenosine triphosphatase) [NCBI Gene 2272] {aka AP3Aase, FRA3B}, DMRTA2 (DMRT like family A2) [NCBI Gene 63950] {aka DMRT5}, SOCS5 (suppressor of cytokine signaling 5) [NCBI Gene 9655] {aka CIS6, CISH6, Cish5, SOCS-5}, SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021] {aka ATOD4, CIS3, Cish3, SOCS-3, SSI-3, SSI3}, TAC1 (tachykinin precursor 1) [NCBI Gene 6863] {aka Hs.2563, NK2, NKNA, NPK, TAC2}
- **Diseases:** NS (MESH:D009404), corticosteroid (MESH:C565152), GC (MESH:C564221), metabolic disturbances (MESH:D024821), inflammation-related diseases (MESH:D007249), CKD (MESH:D051436), edema (MESH:D004487), cancers (MESH:D009369), Down syndrome (MESH:D004314), hypoalbuminemia (MESH:D034141), juvenile spondyloarthritis (MESH:D013167), autoimmune diseases (MESH:D001327), FSGS (MESH:D005923), fatty liver (MESH:D005234), IgA nephropathy (MESH:D005922), proteinuria (MESH:D011507), metabolic diseases (MESH:D008659), autoinflammatory and (MESH:D056660), leukemic (MESH:D007938), epigenetic abnormalities (MESH:D000014), toxicity (MESH:D064420), ALL (MESH:D054198), ESKD (MESH:D007676), immune disorders (MESH:D007154), infection (MESH:D007239), cardiovascular diseases (MESH:D002318), acute T cell lymphoblastic leukemia (MESH:D054218), depression (MESH:D003866), breast cancer (MESH:D001943), glomerular disease (MESH:D007674), sepsis (MESH:D018805), diabetic nephropathy (MESH:D003928), immune dysregulation (OMIM:614878)
- **Chemicals:** N6-methyladenosine (MESH:C010223), 5-mC (MESH:D044503), cytosine (MESH:D003596), ciclosporin (MESH:D016572), tacrolimus (MESH:D016559), prednisolone (MESH:D011239), LPS (MESH:D008070), prednisone (MESH:D011241), steroid (MESH:D013256), m6A (MESH:C005955)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12955196/full.md

## References

156 references — full list in the complete paper: https://tomesphere.com/paper/PMC12955196/full.md

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Source: https://tomesphere.com/paper/PMC12955196